Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000339A_C04 KMC000339A_c04
(668 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A84668 Argonaute (AGO1)-like protein [imported] - Arabidops... 136 5e-44
ref|NP_565633.1| Argonaute (AGO1)-like protein; protein id: At2g... 136 5e-44
dbj|BAA88176.1| unnamed protein product [Oryza sativa (japonica ... 134 9e-43
ref|NP_197613.1| zwille/pinhead-like protein; protein id: At5g21... 129 5e-40
emb|CAD66636.1| ARGONAUTE9 protein [Arabidopsis thaliana] 127 2e-39
>pir||A84668 Argonaute (AGO1)-like protein [imported] - Arabidopsis thaliana
Length = 930
Score = 136 bits (342), Expect(2) = 5e-44
Identities = 62/70 (88%), Positives = 67/70 (95%)
Frame = -3
Query: 666 IDNKIVHPRNNDFYMCAHAGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQRSTT 487
IDNKI HP+NNDFY+CAHAGMIGT+RPTHYHVL D+IGFS DELQELVHSLSYVYQRST+
Sbjct: 809 IDNKICHPKNNDFYLCAHAGMIGTTRPTHYHVLYDEIGFSADELQELVHSLSYVYQRSTS 868
Query: 486 AISVVAPICY 457
AISVVAPICY
Sbjct: 869 AISVVAPICY 878
Score = 63.9 bits (154), Expect(2) = 5e-44
Identities = 33/53 (62%), Positives = 42/53 (78%), Gaps = 1/53 (1%)
Frame = -1
Query: 455 AHLAATQIGQFMKFEDKSDTSSSHGGLTAAGVAPV-VPQLPKLQDSVSQFYVF 300
AHLAA Q+G FMKFED+S+TSSSHGG+TA G P+ V QLP+L+D+V+ F
Sbjct: 879 AHLAAAQLGTFMKFEDQSETSSSHGGITAPG--PISVAQLPRLKDNVANSMFF 929
>ref|NP_565633.1| Argonaute (AGO1)-like protein; protein id: At2g27040.1, supported by
cDNA: gi_14334815, supported by cDNA: gi_15293198
[Arabidopsis thaliana] gi|14334816|gb|AAK59586.1|
putative Argonaute (AGO1) protein [Arabidopsis thaliana]
gi|15293199|gb|AAK93710.1| putative argonaute AGO1
protein [Arabidopsis thaliana] gi|20197419|gb|AAC77862.2|
Argonaute (AGO1)-like protein [Arabidopsis thaliana]
Length = 924
Score = 136 bits (342), Expect(2) = 5e-44
Identities = 62/70 (88%), Positives = 67/70 (95%)
Frame = -3
Query: 666 IDNKIVHPRNNDFYMCAHAGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQRSTT 487
IDNKI HP+NNDFY+CAHAGMIGT+RPTHYHVL D+IGFS DELQELVHSLSYVYQRST+
Sbjct: 803 IDNKICHPKNNDFYLCAHAGMIGTTRPTHYHVLYDEIGFSADELQELVHSLSYVYQRSTS 862
Query: 486 AISVVAPICY 457
AISVVAPICY
Sbjct: 863 AISVVAPICY 872
Score = 63.9 bits (154), Expect(2) = 5e-44
Identities = 33/53 (62%), Positives = 42/53 (78%), Gaps = 1/53 (1%)
Frame = -1
Query: 455 AHLAATQIGQFMKFEDKSDTSSSHGGLTAAGVAPV-VPQLPKLQDSVSQFYVF 300
AHLAA Q+G FMKFED+S+TSSSHGG+TA G P+ V QLP+L+D+V+ F
Sbjct: 873 AHLAAAQLGTFMKFEDQSETSSSHGGITAPG--PISVAQLPRLKDNVANSMFF 923
>dbj|BAA88176.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 904
Score = 134 bits (338), Expect(2) = 9e-43
Identities = 60/70 (85%), Positives = 66/70 (93%)
Frame = -3
Query: 666 IDNKIVHPRNNDFYMCAHAGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQRSTT 487
+DN + HPRNNDFYMCAHAGMIGT+RPTHYH+L D+IGFS D+LQELVHSLSYVYQRSTT
Sbjct: 783 VDNAVCHPRNNDFYMCAHAGMIGTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQRSTT 842
Query: 486 AISVVAPICY 457
AISVVAPICY
Sbjct: 843 AISVVAPICY 852
Score = 61.2 bits (147), Expect(2) = 9e-43
Identities = 30/52 (57%), Positives = 39/52 (74%)
Frame = -1
Query: 455 AHLAATQIGQFMKFEDKSDTSSSHGGLTAAGVAPVVPQLPKLQDSVSQFYVF 300
AHLAA Q+ QF+KF++ S+TSSSHGG T+AG AP VP+LP+L + V F
Sbjct: 853 AHLAAAQVSQFIKFDEMSETSSSHGGHTSAGSAP-VPELPRLHNKVRSSMFF 903
>ref|NP_197613.1| zwille/pinhead-like protein; protein id: At5g21150.1 [Arabidopsis
thaliana] gi|29294055|gb|AAO73892.1| PAZ (Piwi Argonaut
and Zwille) family [Arabidopsis thaliana]
Length = 892
Score = 129 bits (324), Expect(2) = 5e-40
Identities = 58/70 (82%), Positives = 66/70 (93%)
Frame = -3
Query: 666 IDNKIVHPRNNDFYMCAHAGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQRSTT 487
ID++I HPRN DFY+CAHAGMIGT+RPTHYHVL D+IGF+ D+LQELVHSLSYVYQRSTT
Sbjct: 771 IDSQICHPRNFDFYLCAHAGMIGTTRPTHYHVLYDEIGFATDDLQELVHSLSYVYQRSTT 830
Query: 486 AISVVAPICY 457
AISVVAP+CY
Sbjct: 831 AISVVAPVCY 840
Score = 57.4 bits (137), Expect(2) = 5e-40
Identities = 28/52 (53%), Positives = 37/52 (70%)
Frame = -1
Query: 455 AHLAATQIGQFMKFEDKSDTSSSHGGLTAAGVAPVVPQLPKLQDSVSQFYVF 300
AHLAA Q+G MK+E+ S+TSSSHGG+T G P VP +P+L ++VS F
Sbjct: 841 AHLAAAQMGTVMKYEELSETSSSHGGITTPGAVP-VPPMPQLHNNVSTSMFF 891
>emb|CAD66636.1| ARGONAUTE9 protein [Arabidopsis thaliana]
Length = 896
Score = 127 bits (319), Expect(2) = 2e-39
Identities = 57/70 (81%), Positives = 66/70 (93%)
Frame = -3
Query: 666 IDNKIVHPRNNDFYMCAHAGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQRSTT 487
ID++I HPRN DFY+CAHAGMIGT+RPTHYHVL D+IGF+ D+LQELVHSLS+VYQRSTT
Sbjct: 775 IDSQICHPRNFDFYLCAHAGMIGTTRPTHYHVLYDEIGFATDDLQELVHSLSHVYQRSTT 834
Query: 486 AISVVAPICY 457
AISVVAP+CY
Sbjct: 835 AISVVAPVCY 844
Score = 57.4 bits (137), Expect(2) = 2e-39
Identities = 28/52 (53%), Positives = 37/52 (70%)
Frame = -1
Query: 455 AHLAATQIGQFMKFEDKSDTSSSHGGLTAAGVAPVVPQLPKLQDSVSQFYVF 300
AHLAA Q+G MK+E+ S+TSSSHGG+T G P VP +P+L ++VS F
Sbjct: 845 AHLAAAQMGTVMKYEELSETSSSHGGITTPGTVP-VPPMPQLHNNVSTSMFF 895
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,099,580
Number of Sequences: 1393205
Number of extensions: 13234241
Number of successful extensions: 38077
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 36408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38028
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
