Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000338A_C01 KMC000338A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176151.1| disease resistance protein (CC-NBS-LRR class), ... 33 1.9
pir||T52438 PRM1 homolog [imported] - Arabidopsis thaliana (frag... 33 1.9
ref|NP_683446.1| similar to disease resistance protein (CC-NBS-L... 33 1.9
dbj|BAB84013.1| disease resistance protein [Arabidopsis thaliana] 33 1.9
dbj|BAB84017.1| disease resistance gene [Arabidopsis thaliana] 33 1.9
>ref|NP_176151.1| disease resistance protein (CC-NBS-LRR class), putative; protein
id: At1g59124.1 [Arabidopsis thaliana]
gi|14475950|gb|AAK62797.1|AC027036_18 viral resistance
protein, putative [Arabidopsis thaliana]
Length = 1155
Score = 33.5 bits (75), Expect = 1.9
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = -2
Query: 429 LECLFLDQQLHLIGVSWCWE*CNPTSEVCMGLMQRLRVGWDEKQSFGVRICILKSYIKRD 250
L C+ D++ + +G+ GL R+ + QSFGV+ I+ K+
Sbjct: 98 LACIIPDRRRYALGIG--------------GLSNRISKVIRDMQSFGVQQAIVDGGYKQP 143
Query: 249 SSCKRNELRDSFLSEDDGNKVTL 181
K+ E+R F +DD + V L
Sbjct: 144 QGDKQREMRQKFSKDDDSDFVGL 166
>pir||T52438 PRM1 homolog [imported] - Arabidopsis thaliana (fragment)
gi|6520173|dbj|BAA87943.1| PRM1 homolog [Arabidopsis
thaliana]
Length = 560
Score = 33.5 bits (75), Expect = 1.9
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = -2
Query: 429 LECLFLDQQLHLIGVSWCWE*CNPTSEVCMGLMQRLRVGWDEKQSFGVRICILKSYIKRD 250
L C+ D++ + +G+ GL R+ + QSFGV+ I+ K+
Sbjct: 98 LACIIPDRRRYALGIG--------------GLSNRISKVIRDMQSFGVQQAIVDGGYKQP 143
Query: 249 SSCKRNELRDSFLSEDDGNKVTL 181
K+ E+R F +DD + V L
Sbjct: 144 QGDKQREMRQKFSKDDDSDFVGL 166
>ref|NP_683446.1| similar to disease resistance protein (CC-NBS-LRR class), putative;
protein id: At1g58807.1 [Arabidopsis thaliana]
Length = 1017
Score = 33.5 bits (75), Expect = 1.9
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = -2
Query: 429 LECLFLDQQLHLIGVSWCWE*CNPTSEVCMGLMQRLRVGWDEKQSFGVRICILKSYIKRD 250
L C+ D++ + +G+ GL R+ + QSFGV+ I+ K+
Sbjct: 98 LACIIPDRRRYALGIG--------------GLSNRISKVIRDMQSFGVQQAIVDGGYKQP 143
Query: 249 SSCKRNELRDSFLSEDDGNKVTL 181
K+ E+R F +DD + V L
Sbjct: 144 QGDKQREMRQKFSKDDDSDFVGL 166
>dbj|BAB84013.1| disease resistance protein [Arabidopsis thaliana]
Length = 855
Score = 33.5 bits (75), Expect = 1.9
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = -2
Query: 429 LECLFLDQQLHLIGVSWCWE*CNPTSEVCMGLMQRLRVGWDEKQSFGVRICILKSYIKRD 250
L C+ D++ + +G+ GL R+ + QSFGV+ I+ K+
Sbjct: 98 LACIIPDRRRYALGIG--------------GLSNRISKVIRDMQSFGVQQAIVDGGYKQP 143
Query: 249 SSCKRNELRDSFLSEDDGNKVTL 181
K+ E+R F +DD + V L
Sbjct: 144 QGDKQREMRQKFSKDDDSDFVGL 166
>dbj|BAB84017.1| disease resistance gene [Arabidopsis thaliana]
Length = 627
Score = 33.5 bits (75), Expect = 1.9
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = -2
Query: 429 LECLFLDQQLHLIGVSWCWE*CNPTSEVCMGLMQRLRVGWDEKQSFGVRICILKSYIKRD 250
L C+ D++ + +G+ GL R+ + QSFGV+ I+ K+
Sbjct: 98 LACIIPDRRRYALGIG--------------GLSNRISKVIRDMQSFGVQQAIVDGGYKQP 143
Query: 249 SSCKRNELRDSFLSEDDGNKVTL 181
K+ E+R F +DD + V L
Sbjct: 144 QGDKQREMRQKFSKDDDSDFVGL 166
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,273,047
Number of Sequences: 1393205
Number of extensions: 11318521
Number of successful extensions: 26959
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 25925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26893
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
