Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000336A_C02 KMC000336A_c02
(894 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06228 glutamate synthase (ferredoxin) (EC 1.4.7.1) - soybe... 160 2e-38
pir||S67496 glutamate synthase (ferredoxin) (EC 1.4.7.1) - spina... 149 4e-35
sp|Q43155|GLSF_SPIOL Ferredoxin-dependent glutamate synthase, ch... 149 4e-35
emb|CAA56286.1| glutamate synthase (ferredoxin) [Pinus sylvestris] 146 4e-34
emb|CAA70862.1| ferredoxin-dependent glutamate synthase [Arabido... 145 8e-34
>pir||T06228 glutamate synthase (ferredoxin) (EC 1.4.7.1) - soybean (fragment)
gi|2773270|gb|AAB96761.1| ferredoxin-dependent glutamate
synthase [Glycine max]
Length = 1023
Score = 160 bits (405), Expect = 2e-38
Identities = 75/94 (79%), Positives = 87/94 (91%)
Frame = -2
Query: 893 AYLLDEDDTLIPKLNRDIVKIQRVTAPVGQMKLRSLIEAHAEKAGSGKGTAILKDWDKYL 714
AY+LDEDDT IPK+NR+IVKIQ+V+APVGQM+L +LIEAH EK GS KG AILKDWDKYL
Sbjct: 930 AYILDEDDTFIPKVNREIVKIQQVSAPVGQMQLNTLIEAHVEKTGSTKGAAILKDWDKYL 989
Query: 713 SLFWQLVPPTEEDTPEANAKFGTTTSEQVTFQSA 612
SLFWQLVPP+EEDTPEANAK+ TTT++QVT+QSA
Sbjct: 990 SLFWQLVPPSEEDTPEANAKYDTTTADQVTYQSA 1023
>pir||S67496 glutamate synthase (ferredoxin) (EC 1.4.7.1) - spinach (fragment)
gi|414979|gb|AAA18948.1| ferredoxin-dependent glutamate
synthase
Length = 1482
Score = 149 bits (377), Expect = 4e-35
Identities = 71/94 (75%), Positives = 82/94 (86%)
Frame = -2
Query: 893 AYLLDEDDTLIPKLNRDIVKIQRVTAPVGQMKLRSLIEAHAEKAGSGKGTAILKDWDKYL 714
AY+LDEDDTLIPK+N++IVKIQRVTAPVGQM+L++LIEAH EK GS KG +ILKDWDKYL
Sbjct: 1389 AYILDEDDTLIPKVNKEIVKIQRVTAPVGQMQLKNLIEAHVEKTGSSKGASILKDWDKYL 1448
Query: 713 SLFWQLVPPTEEDTPEANAKFGTTTSEQVTFQSA 612
LFWQLVPP+EEDTPEA+A F TSE + QSA
Sbjct: 1449 PLFWQLVPPSEEDTPEASAMFEQMTSEGASLQSA 1482
>sp|Q43155|GLSF_SPIOL Ferredoxin-dependent glutamate synthase, chloroplast (Fd-GOGAT)
gi|3329463|gb|AAC26853.1| ferroxin-dependent glutamate
synthase precursor [Spinacia oleracea]
Length = 1517
Score = 149 bits (377), Expect = 4e-35
Identities = 71/94 (75%), Positives = 82/94 (86%)
Frame = -2
Query: 893 AYLLDEDDTLIPKLNRDIVKIQRVTAPVGQMKLRSLIEAHAEKAGSGKGTAILKDWDKYL 714
AY+LDEDDTLIPK+N++IVKIQRVTAPVGQM+L++LIEAH EK GS KG +ILKDWDKYL
Sbjct: 1424 AYILDEDDTLIPKVNKEIVKIQRVTAPVGQMQLKNLIEAHVEKTGSSKGASILKDWDKYL 1483
Query: 713 SLFWQLVPPTEEDTPEANAKFGTTTSEQVTFQSA 612
LFWQLVPP+EEDTPEA+A F TSE + QSA
Sbjct: 1484 PLFWQLVPPSEEDTPEASAMFEQMTSEGASLQSA 1517
>emb|CAA56286.1| glutamate synthase (ferredoxin) [Pinus sylvestris]
Length = 550
Score = 146 bits (369), Expect = 4e-34
Identities = 67/94 (71%), Positives = 83/94 (88%)
Frame = -2
Query: 893 AYLLDEDDTLIPKLNRDIVKIQRVTAPVGQMKLRSLIEAHAEKAGSGKGTAILKDWDKYL 714
AYLLDEDDTLIPK+N++IVKIQRV APVGQ++L+ LIEAH +K GS KGTA+LK+W+KYL
Sbjct: 457 AYLLDEDDTLIPKVNKEIVKIQRVVAPVGQLQLKQLIEAHVDKTGSTKGTAVLKEWEKYL 516
Query: 713 SLFWQLVPPTEEDTPEANAKFGTTTSEQVTFQSA 612
LFWQLVPP+EED+PEAN +FG T E++T +SA
Sbjct: 517 PLFWQLVPPSEEDSPEANPEFGDRTVERITVKSA 550
>emb|CAA70862.1| ferredoxin-dependent glutamate synthase [Arabidopsis thaliana]
gi|28630626|gb|AAO45843.1| ferredoxin-dependent glutamate
synthase [Arabidopsis thaliana]
Length = 1648
Score = 145 bits (366), Expect = 8e-34
Identities = 67/94 (71%), Positives = 82/94 (86%)
Frame = -2
Query: 893 AYLLDEDDTLIPKLNRDIVKIQRVTAPVGQMKLRSLIEAHAEKAGSGKGTAILKDWDKYL 714
AYLLDEDDTL+PK+NR+IVKIQRVTAP G+++L+SLIEAH EK GS KG IL +W+KYL
Sbjct: 1555 AYLLDEDDTLLPKINREIVKIQRVTAPAGELQLKSLIEAHVEKTGSSKGATILNEWEKYL 1614
Query: 713 SLFWQLVPPTEEDTPEANAKFGTTTSEQVTFQSA 612
LFWQLVPP+EEDTPEA+A + T++ +VTFQSA
Sbjct: 1615 PLFWQLVPPSEEDTPEASAAYVRTSTGEVTFQSA 1648
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 778,984,362
Number of Sequences: 1393205
Number of extensions: 17522997
Number of successful extensions: 46774
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 45478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46750
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 48775691475
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
