Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000335A_C01 KMC000335A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL38338.1| unknown protein [Arabidopsis thaliana] 75 9e-13
ref|NP_181727.1| unknown protein; protein id: At2g41960.1 [Arabi... 75 9e-13
ref|NP_191364.1| putative protein; protein id: At3g58050.1 [Arab... 59 4e-08
gb|AAN60986.1| Hypothetical protein [Oryza sativa (japonica cult... 40 0.018
gb|AAK00428.2|AC069324_14 Unknown protein [Oryza sativa] 37 0.20
>gb|AAL38338.1| unknown protein [Arabidopsis thaliana]
Length = 660
Score = 74.7 bits (182), Expect = 9e-13
Identities = 40/77 (51%), Positives = 52/77 (66%), Gaps = 3/77 (3%)
Frame = -3
Query: 563 ENNSDFSLFHFGGPVALSTGCKSTLASSNGGTIGDFRTKSSEDHV---ESVHTCHKKETT 393
+++ +FSLFHFGGPVALSTG K+ A S G + DF + S DHV + ++ +KE T
Sbjct: 582 DSDENFSLFHFGGPVALSTGSKANPARSKDGILEDFSLQFSGDHVFGDPTGNSKKEKENT 641
Query: 392 TMEEYNLFAASNNLRLS 342
EEYNLFA SN+LR S
Sbjct: 642 VGEEYNLFATSNSLRFS 658
>ref|NP_181727.1| unknown protein; protein id: At2g41960.1 [Arabidopsis thaliana]
gi|25339470|pir||C84848 hypothetical protein At2g41960
[imported] - Arabidopsis thaliana
gi|1871187|gb|AAB63547.1| unknown protein [Arabidopsis
thaliana]
Length = 1215
Score = 74.7 bits (182), Expect = 9e-13
Identities = 40/77 (51%), Positives = 52/77 (66%), Gaps = 3/77 (3%)
Frame = -3
Query: 563 ENNSDFSLFHFGGPVALSTGCKSTLASSNGGTIGDFRTKSSEDHV---ESVHTCHKKETT 393
+++ +FSLFHFGGPVALSTG K+ A S G + DF + S DHV + ++ +KE T
Sbjct: 1137 DSDENFSLFHFGGPVALSTGSKANPARSKDGILEDFSLQFSGDHVFGDPTGNSKKEKENT 1196
Query: 392 TMEEYNLFAASNNLRLS 342
EEYNLFA SN+LR S
Sbjct: 1197 VGEEYNLFATSNSLRFS 1213
>ref|NP_191364.1| putative protein; protein id: At3g58050.1 [Arabidopsis thaliana]
gi|11280709|pir||T46027 hypothetical protein T10K17.260 -
Arabidopsis thaliana gi|6729548|emb|CAB67633.1| putative
protein [Arabidopsis thaliana]
Length = 1209
Score = 59.3 bits (142), Expect = 4e-08
Identities = 35/73 (47%), Positives = 41/73 (55%)
Frame = -3
Query: 560 NNSDFSLFHFGGPVALSTGCKSTLASSNGGTIGDFRTKSSEDHVESVHTCHKKETTTMEE 381
N FSLFHF GPV LSTG KS A S G + D V +++T KE+ +EE
Sbjct: 1144 NEDSFSLFHFSGPVGLSTGSKSKPAHSKDGIL--------RDVVGNIYT-KAKESKEVEE 1194
Query: 380 YNLFAASNNLRLS 342
YNLFA N LR S
Sbjct: 1195 YNLFATGNGLRFS 1207
>gb|AAN60986.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1176
Score = 40.4 bits (93), Expect = 0.018
Identities = 28/77 (36%), Positives = 38/77 (48%)
Frame = -3
Query: 569 SQENNSDFSLFHFGGPVALSTGCKSTLASSNGGTIGDFRTKSSEDHVESVHTCHKKETTT 390
S E N+ FSLF F P+A SS T G+ T++ V+ V C +E T
Sbjct: 1104 SPEGNASFSLFQFNLPIA-----PPAPPSSKDDTSGESATRTPLAQVQ-VQPC-SREQTD 1156
Query: 389 MEEYNLFAASNNLRLSF 339
++EYNLF + N SF
Sbjct: 1157 VKEYNLFCSKNGSMFSF 1173
>gb|AAK00428.2|AC069324_14 Unknown protein [Oryza sativa]
Length = 1190
Score = 37.0 bits (84), Expect = 0.20
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = -3
Query: 566 QENNSDFSLFHFGGPVALSTGCKSTLASSNGGTIGDFRTKSSEDHVESVHTCHKKETTTM 387
Q+ + FSLFHF P++ S S+ +GG + ++S + C ++ET +
Sbjct: 1119 QDGSVPFSLFHFNLPIS-SPAQASSEDEVSGGCLA---SRSPTPSAQKAQPCSREETN-I 1173
Query: 386 EEYNLFAASNNLRLSF 339
+EYNLF+A + F
Sbjct: 1174 KEYNLFSARTGVEFPF 1189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,087,390
Number of Sequences: 1393205
Number of extensions: 11179984
Number of successful extensions: 26510
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 25805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26501
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
