Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000334A_C01 KMC000334A_c01
(467 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_655585.1| FliP, FliP family [Bacillus anthracis A2012] 33 1.5
gb|ZP_00070390.1| hypothetical protein [Oenococcus oeni MCW] 31 7.3
ref|NP_733214.1| Gustatory receptor 98d CG31061-PA gi|23172440|g... 30 9.5
>ref|NP_655585.1| FliP, FliP family [Bacillus anthracis A2012]
Length = 252
Score = 33.1 bits (74), Expect = 1.5
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -2
Query: 370 KVLKDLLLLRRVPCISKASSNRAMWSSVFVVSAFVMVSVMVFSLY*HLGM 221
K LKDL L VP + + + + +F+ AFV + +++ +L +LGM
Sbjct: 168 KDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGM 217
>gb|ZP_00070390.1| hypothetical protein [Oenococcus oeni MCW]
Length = 200
Score = 30.8 bits (68), Expect = 7.3
Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 2/60 (3%)
Frame = -2
Query: 460 TNHVKAMPKTPKSTNNRKIYQRGSNAG--SSTKVLKDLLLLRRVPCISKASSNRAMWSSV 287
T+ + +TP S N + I +GSNAG ++ +L L+ +V +S SS + S+V
Sbjct: 36 TSSAVVVSRTPSSWNGQLIINKGSNAGVKKNSPILDSKGLIGKVTQVSDTSSKVTLISNV 95
>ref|NP_733214.1| Gustatory receptor 98d CG31061-PA gi|23172440|gb|AAN14112.1|
CG31061-PA [Drosophila melanogaster]
Length = 412
Score = 30.4 bits (67), Expect = 9.5
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = -2
Query: 301 MWSSVFVVSAFVMVSVMVFSLY*HLGMF*ILNF*TRRSLLFYFGVN*GEAC---RVGTCL 131
+W V VS + +S+ + LY L + I+N+ +S VN E C RVGTCL
Sbjct: 245 IWGLVNEVSLYFTLSLTLLFLYNELTILQIVNWALIKS------VNPNECCQYRRVGTCL 298
Query: 130 DFVDNSDICVCISSWCI 80
N + S +CI
Sbjct: 299 LLSINIFLSCLYSEFCI 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 368,515,395
Number of Sequences: 1393205
Number of extensions: 7255432
Number of successful extensions: 15548
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15546
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
