Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000333A_C01 KMC000333A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK82651.1| RSH-like protein [Capsicum annuum] 189 3e-47
gb|AAF37283.1|AF225704_1 RSH3 [Arabidopsis thaliana] 179 2e-44
ref|NP_564652.1| RSH3 (RelA/SpoT homolog); protein id: At1g54130... 178 5e-44
pir||D96582 hypothetical protein F15I1.23 [imported] - Arabidops... 178 5e-44
dbj|BAC56909.1| RelA homolog [Suaeda japonica] 174 6e-43
>gb|AAK82651.1| RSH-like protein [Capsicum annuum]
Length = 721
Score = 189 bits (479), Expect = 3e-47
Identities = 95/133 (71%), Positives = 107/133 (80%), Gaps = 5/133 (3%)
Frame = -2
Query: 591 FPSHAADCPYSYKPDNGEEGPVFIIMIENDKMSVQELRANSTVMDLLERAGRSSSRVMTY 412
FP+H+ DCP+S KPD G +GPVFIIMIENDKMSVQE ANSTV DLLERAGR SSR Y
Sbjct: 589 FPAHSEDCPFSCKPDCGTDGPVFIIMIENDKMSVQEFAANSTVKDLLERAGRGSSRWTPY 648
Query: 411 RFPLKEELRPRLNHKPVSDPSCKLKMGDVVELTPAIPDKYLTEYREEIPRMYDRGLT--- 241
FPLKEELRPRLNH+PVSDP+CKL+MGDV+ELTPAI K LTEYREEI RMYDRG++
Sbjct: 649 GFPLKEELRPRLNHEPVSDPNCKLRMGDVIELTPAIRHKSLTEYREEIQRMYDRGVSPLP 708
Query: 240 --VSGTGMVGSRS 208
+ +VG RS
Sbjct: 709 AAAAANTVVGLRS 721
>gb|AAF37283.1|AF225704_1 RSH3 [Arabidopsis thaliana]
Length = 712
Score = 179 bits (454), Expect = 2e-44
Identities = 88/119 (73%), Positives = 94/119 (78%)
Frame = -2
Query: 591 FPSHAADCPYSYKPDNGEEGPVFIIMIENDKMSVQELRANSTVMDLLERAGRSSSRVMTY 412
FPSHA DCP+SYKP +EGPV++I+IEN+KMSVQE NSTV DLL RAG SSR Y
Sbjct: 579 FPSHAEDCPFSYKPSGNQEGPVYVIVIENEKMSVQEFPENSTVSDLLRRAGPGSSRWSMY 638
Query: 411 RFPLKEELRPRLNHKPVSDPSCKLKMGDVVELTPAIPDKYLTEYREEIPRMYDRGLTVS 235
P KEELRPRLN PVSD CKLKMGDVVELTPAIPDK LTEYREEI RMYDRGL S
Sbjct: 639 SIPAKEELRPRLNQTPVSDLKCKLKMGDVVELTPAIPDKSLTEYREEIQRMYDRGLAFS 697
>ref|NP_564652.1| RSH3 (RelA/SpoT homolog); protein id: At1g54130.1, supported by
cDNA: gi_7141307 [Arabidopsis thaliana]
Length = 712
Score = 178 bits (451), Expect = 5e-44
Identities = 87/119 (73%), Positives = 94/119 (78%)
Frame = -2
Query: 591 FPSHAADCPYSYKPDNGEEGPVFIIMIENDKMSVQELRANSTVMDLLERAGRSSSRVMTY 412
FPSHA DCP+SYKP +EGPV++I+IEN+KM+VQE NSTV DLL RAG SSR Y
Sbjct: 579 FPSHAEDCPFSYKPSGNQEGPVYVIVIENEKMTVQEFPENSTVSDLLRRAGPGSSRWSMY 638
Query: 411 RFPLKEELRPRLNHKPVSDPSCKLKMGDVVELTPAIPDKYLTEYREEIPRMYDRGLTVS 235
P KEELRPRLN PVSD CKLKMGDVVELTPAIPDK LTEYREEI RMYDRGL S
Sbjct: 639 SIPAKEELRPRLNQTPVSDLKCKLKMGDVVELTPAIPDKSLTEYREEIQRMYDRGLAFS 697
>pir||D96582 hypothetical protein F15I1.23 [imported] - Arabidopsis thaliana
gi|4587556|gb|AAD25787.1|AC006577_23 Similar to
gi|1653162 (p)ppGpp 3-pyrophosphohydrolase from
Synechocystis sp genome gb|D90911. EST gb|W43807 comes
from this gene. [Arabidopsis thaliana]
Length = 715
Score = 178 bits (451), Expect = 5e-44
Identities = 87/119 (73%), Positives = 94/119 (78%)
Frame = -2
Query: 591 FPSHAADCPYSYKPDNGEEGPVFIIMIENDKMSVQELRANSTVMDLLERAGRSSSRVMTY 412
FPSHA DCP+SYKP +EGPV++I+IEN+KM+VQE NSTV DLL RAG SSR Y
Sbjct: 582 FPSHAEDCPFSYKPSGNQEGPVYVIVIENEKMTVQEFPENSTVSDLLRRAGPGSSRWSMY 641
Query: 411 RFPLKEELRPRLNHKPVSDPSCKLKMGDVVELTPAIPDKYLTEYREEIPRMYDRGLTVS 235
P KEELRPRLN PVSD CKLKMGDVVELTPAIPDK LTEYREEI RMYDRGL S
Sbjct: 642 SIPAKEELRPRLNQTPVSDLKCKLKMGDVVELTPAIPDKSLTEYREEIQRMYDRGLAFS 700
>dbj|BAC56909.1| RelA homolog [Suaeda japonica]
Length = 708
Score = 174 bits (442), Expect = 6e-43
Identities = 81/119 (68%), Positives = 97/119 (81%)
Frame = -2
Query: 591 FPSHAADCPYSYKPDNGEEGPVFIIMIENDKMSVQELRANSTVMDLLERAGRSSSRVMTY 412
FP+H+ CPYSY P +GPVF+I+IEN+KMSV+E NST+MDLLE G S R T+
Sbjct: 574 FPTHSEGCPYSYNPQPNHDGPVFVILIENEKMSVKEFPLNSTMMDLLEATGHGSPRWTTH 633
Query: 411 RFPLKEELRPRLNHKPVSDPSCKLKMGDVVELTPAIPDKYLTEYREEIPRMYDRGLTVS 235
FP+KE+LRPRLNH PVSDP+CKLKMGDV+ELTPA+PDK L EYREEI RMY+RGL+VS
Sbjct: 634 GFPVKEDLRPRLNHFPVSDPTCKLKMGDVIELTPALPDKSLIEYREEIQRMYNRGLSVS 692
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,463,319
Number of Sequences: 1393205
Number of extensions: 12255933
Number of successful extensions: 40656
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 38680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40596
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
