Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000331A_C02 KMC000331A_c02
(1506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568787.1| FtsH protease, putative; protein id: At5g53170.... 62 3e-08
ref|NP_702505.1| hypothetical protein, conserved [Plasmodium fal... 59 2e-07
gb|EAA16259.1| ATP-dependent metalloprotease FtsH, putative [Pla... 57 6e-07
gb|AAD20962.1| FtsH homolog [Homo sapiens] 57 6e-07
emb|CAB99462.1| putative ATPases [Homo sapiens] 57 6e-07
>ref|NP_568787.1| FtsH protease, putative; protein id: At5g53170.1, supported by cDNA:
gi_20258847 [Arabidopsis thaliana]
gi|9757998|dbj|BAB08420.1| cell division protein FtsH
protease-like [Arabidopsis thaliana]
gi|20258848|gb|AAM13906.1| putative FtsH protease
[Arabidopsis thaliana] gi|21689833|gb|AAM67560.1|
putative FtsH protease [Arabidopsis thaliana]
Length = 806
Score = 61.6 bits (148), Expect = 3e-08
Identities = 49/178 (27%), Positives = 79/178 (43%), Gaps = 4/178 (2%)
Frame = -1
Query: 1437 HQAAHVIVMLHLKPSILGDLVFRNELTIPAEKSDLLNGLCCMSRYSLFPSD---SVTKKD 1267
H++ H IV L+ K + P K+ ++ + + PS+ SV+K+
Sbjct: 620 HESGHAIVALNTKGAH------------PIHKATIMPRGSALGMVTQLPSNDETSVSKRQ 667
Query: 1266 LRNRLCILVAGYVGEEMSFGPNFVTTRSKLDFKAGMNLAWYMVSEFAFGE-FGPGSFSDR 1090
L RL + + G V EE+ FG + +TT + D LA YMVS E GP +R
Sbjct: 668 LLARLDVCMGGRVAEELIFGLDHITTGASSDLSQATELAQYMVSSCGMSEAIGPVHIKER 727
Query: 1089 SCVSDQNLYSMEKAARHLLADAVRVARQCLIQHLSQFHSIAKAIGRGEVPTPENVDKL 916
Q+ E LL +A + L +H Q H++A A+ E T E++ ++
Sbjct: 728 PSSDMQSRIDAEVV--KLLREAYERVKSLLKRHEKQLHTLANALLEYETLTAEDIKRI 783
>ref|NP_702505.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|23497690|gb|AAN37229.1|AE014826_28 hypothetical
protein, conserved [Plasmodium falciparum 3D7]
Length = 706
Score = 59.3 bits (142), Expect = 2e-07
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 6/177 (3%)
Frame = -1
Query: 1437 HQAAHVIVMLHLKPSILGDLVFRNELTIPAEKSDLL-NGLCCMSRYSLFPSDSVTKK--D 1267
H+ H +V + K S P K+ ++ G+ + + SD ++K D
Sbjct: 512 HEGGHTLVNFYTKGSD------------PVHKATIMPRGMSLGVTWKIPISDKYSQKIKD 559
Query: 1266 LRNRLCILVAGYVGEEMSFGPNFVTTRSKLDFKAGMNLAWYMVSEFAFG--EFGPGSF-S 1096
+++ + IL+ G V EE+ FG N VTT D + ++A +V + G E F
Sbjct: 560 VQSEIDILMGGLVSEEIIFGKNNVTTGCSSDLQKATHIAQSLVMNYGVGINEDNISMFLH 619
Query: 1095 DRSCVSDQNLYSMEKAARHLLADAVRVARQCLIQHLSQFHSIAKAIGRGEVPTPENV 925
D+ +S++ ++K+ + +L D+ A+ L QH+ + H IA A+ E T + +
Sbjct: 620 DKQNISEEMKIKIDKSIQRILLDSYNRAKNVLNQHIDELHRIASALVEYETLTSDEI 676
>gb|EAA16259.1| ATP-dependent metalloprotease FtsH, putative [Plasmodium yoelii
yoelii]
Length = 703
Score = 57.4 bits (137), Expect = 6e-07
Identities = 33/119 (27%), Positives = 62/119 (51%), Gaps = 3/119 (2%)
Frame = -1
Query: 1272 KDLRNRLCILVAGYVGEEMSFGPNFVTTRSKLDFKAGMNLAWYMVSEFAFG--EFGPGSF 1099
KD+++ + +L+ G V EE+ FG N VTT D + ++A +V + G E F
Sbjct: 555 KDIQSEIDVLMGGMVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVMNYGVGINEENISMF 614
Query: 1098 -SDRSCVSDQNLYSMEKAARHLLADAVRVARQCLIQHLSQFHSIAKAIGRGEVPTPENV 925
D+ +S+ ++K+ + +L D+ A++ L QH+ + H +A A+ E T + +
Sbjct: 615 LQDKKNISEDMKIKIDKSIQRILLDSYNRAKKVLNQHIDELHRVASALVEFETLTNDEI 673
>gb|AAD20962.1| FtsH homolog [Homo sapiens]
Length = 517
Score = 57.4 bits (137), Expect = 6e-07
Identities = 42/173 (24%), Positives = 81/173 (46%), Gaps = 4/173 (2%)
Frame = -1
Query: 1437 HQAAHVIVMLHLKPSILGDLVFRNELTIPAEKSDLLNGLCCMSRYSLFPSD---SVTKKD 1267
H++ H I+ + K ++ P K+ ++ + SL P + + T+
Sbjct: 345 HESGHAIIAYYTKDAM------------PINKATIMPRGPTLGHVSLLPENDRWNETRAQ 392
Query: 1266 LRNRLCILVAGYVGEEMSFGPNFVTTRSKLDFKAGMNLAWYMVSEFAFGE-FGPGSFSDR 1090
L ++ + + G V EE+ FG + +TT + DF +A MV++F E G ++SD
Sbjct: 393 LLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDT 452
Query: 1089 SCVSDQNLYSMEKAARHLLADAVRVARQCLIQHLSQFHSIAKAIGRGEVPTPE 931
+S + ++E+ R LL D+ A+ L H + ++A+A+ E P+
Sbjct: 453 GKLSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLMPK 505
>emb|CAB99462.1| putative ATPases [Homo sapiens]
Length = 517
Score = 57.4 bits (137), Expect = 6e-07
Identities = 42/173 (24%), Positives = 81/173 (46%), Gaps = 4/173 (2%)
Frame = -1
Query: 1437 HQAAHVIVMLHLKPSILGDLVFRNELTIPAEKSDLLNGLCCMSRYSLFPSD---SVTKKD 1267
H++ H I+ + K ++ P K+ ++ + SL P + + T+
Sbjct: 345 HESGHAIIAYYTKDAM------------PINKATIMPRGPTLGHVSLLPENDRWNETRAQ 392
Query: 1266 LRNRLCILVAGYVGEEMSFGPNFVTTRSKLDFKAGMNLAWYMVSEFAFGE-FGPGSFSDR 1090
L ++ + + G V EE+ FG + +TT + DF +A MV++F E G ++SD
Sbjct: 393 LLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDT 452
Query: 1089 SCVSDQNLYSMEKAARHLLADAVRVARQCLIQHLSQFHSIAKAIGRGEVPTPE 931
+S + ++E+ R LL D+ A+ L H + ++A+A+ E P+
Sbjct: 453 GKLSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLMPK 505
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,163,352,813
Number of Sequences: 1393205
Number of extensions: 24340695
Number of successful extensions: 55788
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 52831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55766
length of database: 448,689,247
effective HSP length: 128
effective length of database: 270,359,007
effective search space used: 100843909611
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
