Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000330A_C01 KMC000330A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA84613.1| unnamed protein product [Oryza sativa (japonica ... 136 2e-31
dbj|BAA95777.1| gene_id:K20I9.6~unknown protein [Arabidopsis tha... 132 3e-30
ref|NP_188306.2| unknown protein; protein id: At3g16830.1, suppo... 132 3e-30
pir||T01778 hypothetical protein A_IG002P16.14 - Arabidopsis tha... 119 4e-26
ref|NP_198055.1| putative protein; protein id: At5g27030.1 [Arab... 119 4e-26
>dbj|BAA84613.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 930
Score = 136 bits (342), Expect = 2e-31
Identities = 65/110 (59%), Positives = 86/110 (78%), Gaps = 1/110 (0%)
Frame = -2
Query: 591 VYAAFTDGNIGVFDADSLRLRCRIASSAYLHQTSSNSQ-NIFPVVVAAHPQEPNQFAVGL 415
V+AAFTDGNIG+FD ++LRLRCRIA AYL + NS +++P+VVAAHPQE NQFAVGL
Sbjct: 823 VFAAFTDGNIGIFDVENLRLRCRIAPPAYLSSAAINSNPSVYPLVVAAHPQESNQFAVGL 882
Query: 414 SDGGIKVIEPIESNGRWGVSASVDNGMQNGNGRTASPSITNNSTSEQLPR 265
SDG +KVIEP+ES G+WG + +NG+ NGRT++ S T+N ++Q+ R
Sbjct: 883 SDGSVKVIEPLESEGKWGTTPPTENGVP--NGRTSTSSATSNPAADQIQR 930
>dbj|BAA95777.1| gene_id:K20I9.6~unknown protein [Arabidopsis thaliana]
Length = 1161
Score = 132 bits (333), Expect = 3e-30
Identities = 72/141 (51%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
Frame = -2
Query: 591 VYAAFTDGNIGVFDADSLRLRCRIASSAYLHQTSSNSQNIFPVVVAAHPQEPNQFAVGLS 412
VYA+F DGNI VFDA+SLRLRCRIA SAY+ Q + NS IFP V+ AHPQEPNQ AVGLS
Sbjct: 1022 VYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLAVGLS 1081
Query: 411 DGGIKVIEPIESNGRWGVS-ASVDNGMQNGNGRTASPSITNNSTSEQLPR*FIHTPF*FL 235
DG +KVIEP E + RWGV A+ + NGR +S S NNS+S+Q+ F
Sbjct: 1082 DGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQI------QSFKMA 1135
Query: 234 FM*NYCKTVRLNVS*LCDVKL 172
+ N +++S +CD+++
Sbjct: 1136 ILLNVVALKSMDLSKICDLRV 1156
>ref|NP_188306.2| unknown protein; protein id: At3g16830.1, supported by cDNA:
gi_18377647 [Arabidopsis thaliana]
Length = 1131
Score = 132 bits (333), Expect = 3e-30
Identities = 68/110 (61%), Positives = 81/110 (72%), Gaps = 1/110 (0%)
Frame = -2
Query: 591 VYAAFTDGNIGVFDADSLRLRCRIASSAYLHQTSSNSQNIFPVVVAAHPQEPNQFAVGLS 412
VYA+F DGNI VFDA+SLRLRCRIA SAY+ Q + NS IFP V+ AHPQEPNQ AVGLS
Sbjct: 1022 VYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLAVGLS 1081
Query: 411 DGGIKVIEPIESNGRWGVS-ASVDNGMQNGNGRTASPSITNNSTSEQLPR 265
DG +KVIEP E + RWGV A+ + NGR +S S NNS+S+Q+ R
Sbjct: 1082 DGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQR 1131
>pir||T01778 hypothetical protein A_IG002P16.14 - Arabidopsis thaliana
gi|2191165|gb|AAB61051.1| Hypothetical protein F2P16.14
[Arabidopsis thaliana]
Length = 123
Score = 119 bits (297), Expect = 4e-26
Identities = 62/109 (56%), Positives = 75/109 (67%)
Frame = -2
Query: 591 VYAAFTDGNIGVFDADSLRLRCRIASSAYLHQTSSNSQNIFPVVVAAHPQEPNQFAVGLS 412
+Y F DGNIGVFDADSLRLRCRI+ SAYL Q +Q + P+VVAAHPQ+PNQFAVGL+
Sbjct: 26 IYTTFRDGNIGVFDADSLRLRCRISPSAYLPQ---GNQGLSPLVVAAHPQDPNQFAVGLN 82
Query: 411 DGGIKVIEPIESNGRWGVSASVDNGMQNGNGRTASPSITNNSTSEQLPR 265
DG +K++EP E G+W GM + SPS T+N T EQL R
Sbjct: 83 DGSVKMMEPTEGEGKW--------GMIPPSEAINSPSTTSNQTPEQLQR 123
>ref|NP_198055.1| putative protein; protein id: At5g27030.1 [Arabidopsis thaliana]
Length = 1167
Score = 119 bits (297), Expect = 4e-26
Identities = 62/109 (56%), Positives = 75/109 (67%)
Frame = -2
Query: 591 VYAAFTDGNIGVFDADSLRLRCRIASSAYLHQTSSNSQNIFPVVVAAHPQEPNQFAVGLS 412
+Y F DGNIGVFDADSLRLRCRI+ SAYL Q +Q + P+VVAAHPQ+PNQFAVGL+
Sbjct: 1070 IYTTFRDGNIGVFDADSLRLRCRISPSAYLPQ---GNQGLSPLVVAAHPQDPNQFAVGLN 1126
Query: 411 DGGIKVIEPIESNGRWGVSASVDNGMQNGNGRTASPSITNNSTSEQLPR 265
DG +K++EP E G+W GM + SPS T+N T EQL R
Sbjct: 1127 DGSVKMMEPTEGEGKW--------GMIPPSEAINSPSTTSNQTPEQLQR 1167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,437,954
Number of Sequences: 1393205
Number of extensions: 10296563
Number of successful extensions: 24902
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 23906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24877
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
