Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000329A_C01 KMC000329A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180454.2| putative para-aminobenzoate synthase and glutam... 146 2e-34
pir||A84690 hypothetical protein At2g28880 [imported] - Arabidop... 146 2e-34
ref|NP_487483.1| p-aminobenzoic acid synthase [Nostoc sp. PCC 71... 86 3e-16
gb|ZP_00111643.1| hypothetical protein [Nostoc punctiforme] 83 2e-15
sp|P32483|PABS_STRGR Para-aminobenzoate synthase (P-aminobenzoic... 78 8e-14
>ref|NP_180454.2| putative para-aminobenzoate synthase and glutamine
amidotransferase, a bifunctional enzyme; protein id:
At2g28880.1, supported by cDNA: gi_20466064 [Arabidopsis
thaliana] gi|20466065|gb|AAM19955.1| At2g28880/F8N16.17
[Arabidopsis thaliana] gi|27363398|gb|AAO11618.1|
At2g28880/F8N16.17 [Arabidopsis thaliana]
Length = 919
Score = 146 bits (368), Expect = 2e-34
Identities = 73/113 (64%), Positives = 85/113 (74%), Gaps = 2/113 (1%)
Frame = +2
Query: 215 RYRGGRNVRVCCQLVPSHLQE-SYKRKKRPQ-VPKQKLDFVRTLLIENYDSYTYNIYQAL 388
R + R V + VP L++ S +K P+ P +KL FVRTLLI+NYDSYT+NIYQAL
Sbjct: 45 RSKTTRKVLASSRYVPGKLEDLSVVKKSLPRREPVEKLGFVRTLLIDNYDSYTFNIYQAL 104
Query: 389 SVINGIPPVVIRNDEWTWEELCHYLYEEYAFDNIVISPAPGTPSXPEDIGICL 547
S ING+PPVVIRNDEWTWEE HYLYE+ AFDNIVISP PG+P P DIGICL
Sbjct: 105 STINGVPPVVIRNDEWTWEEAYHYLYEDVAFDNIVISPGPGSPMCPADIGICL 157
>pir||A84690 hypothetical protein At2g28880 [imported] - Arabidopsis thaliana
gi|3927835|gb|AAC79592.1| putative para-aminobenzoate
synthase and glutamine amidotransferase, a bifunctional
enzyme [Arabidopsis thaliana]
Length = 917
Score = 146 bits (368), Expect = 2e-34
Identities = 73/113 (64%), Positives = 85/113 (74%), Gaps = 2/113 (1%)
Frame = +2
Query: 215 RYRGGRNVRVCCQLVPSHLQE-SYKRKKRPQ-VPKQKLDFVRTLLIENYDSYTYNIYQAL 388
R + R V + VP L++ S +K P+ P +KL FVRTLLI+NYDSYT+NIYQAL
Sbjct: 43 RSKTTRKVLASSRYVPGKLEDLSVVKKSLPRREPVEKLGFVRTLLIDNYDSYTFNIYQAL 102
Query: 389 SVINGIPPVVIRNDEWTWEELCHYLYEEYAFDNIVISPAPGTPSXPEDIGICL 547
S ING+PPVVIRNDEWTWEE HYLYE+ AFDNIVISP PG+P P DIGICL
Sbjct: 103 STINGVPPVVIRNDEWTWEEAYHYLYEDVAFDNIVISPGPGSPMCPADIGICL 155
>ref|NP_487483.1| p-aminobenzoic acid synthase [Nostoc sp. PCC 7120]
gi|25291359|pir||AD2236 p-aminobenzoic acid synthase
[imported] - Nostoc sp. (strain PCC 7120)
gi|17132576|dbj|BAB75142.1| p-aminobenzoic acid synthase
[Nostoc sp. PCC 7120]
Length = 714
Score = 85.9 bits (211), Expect = 3e-16
Identities = 38/72 (52%), Positives = 52/72 (71%)
Frame = +2
Query: 329 VRTLLIENYDSYTYNIYQALSVINGIPPVVIRNDEWTWEELCHYLYEEYAFDNIVISPAP 508
++TL+I+NYDSYT+N+YQ ++ +NG P+VI ND+ W EL ++ FDNIVISP P
Sbjct: 4 IKTLIIDNYDSYTFNLYQMIAEVNGELPLVIHNDKLDWYEL-----KQLVFDNIVISPGP 58
Query: 509 GTPSXPEDIGIC 544
G P P+D GIC
Sbjct: 59 GRPENPKDFGIC 70
>gb|ZP_00111643.1| hypothetical protein [Nostoc punctiforme]
Length = 741
Score = 82.8 bits (203), Expect = 2e-15
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = +2
Query: 329 VRTLLIENYDSYTYNIYQALSVINGIPPVVIRNDEWTWEELCHYLYEEYAFDNIVISPAP 508
++TL+I+NYDSYT+N+YQ ++ +N P VI ND++ W+EL H + FDNIVISP P
Sbjct: 1 MKTLIIDNYDSYTFNLYQLIAEVNAEYPTVIYNDQFAWDELQH-----WEFDNIVISPGP 55
Query: 509 GTPSXPEDIGIC 544
G P +D GIC
Sbjct: 56 GRPENLKDFGIC 67
>sp|P32483|PABS_STRGR Para-aminobenzoate synthase (P-aminobenzoic acid synthase) (PABA
synthase) gi|484360|pir||JN0531 p-aminobenzoic acid
synthase (EC 4.1.3.-) - Streptomyces griseus
gi|388263|gb|AAA72111.1| p-aminobenzoic acid synthase
Length = 723
Score = 77.8 bits (190), Expect = 8e-14
Identities = 38/72 (52%), Positives = 49/72 (67%)
Frame = +2
Query: 329 VRTLLIENYDSYTYNIYQALSVINGIPPVVIRNDEWTWEELCHYLYEEYAFDNIVISPAP 508
+RTLL++NYDS+TYN++ LS NG P VIRND+ W L + AFDN+V+SP P
Sbjct: 1 MRTLLVDNYDSFTYNLFHYLSRANGREPEVIRNDDPAWRP---GLLD--AFDNVVLSPGP 55
Query: 509 GTPSXPEDIGIC 544
GTP P D G+C
Sbjct: 56 GTPHRPADFGLC 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,816,304
Number of Sequences: 1393205
Number of extensions: 10627481
Number of successful extensions: 26569
Number of sequences better than 10.0: 218
Number of HSP's better than 10.0 without gapping: 25738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26424
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
