Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000328A_C01 KMC000328A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198076.1| putative protein; protein id: At5g27240.1 [Arab... 75 4e-13
pir||T01797 hypothetical protein A_TM021B04.9 - Arabidopsis thal... 75 4e-13
ref|NP_187147.1| hypothetical protein; protein id: At3g04960.1 [... 67 2e-10
ref|NP_187149.1| hypothetical protein, contains DnaJ motif: prok... 59 4e-08
ref|NP_187285.1| putative DnaJ protein; protein id: At3g06340.1 ... 57 1e-07
>ref|NP_198076.1| putative protein; protein id: At5g27240.1 [Arabidopsis thaliana]
Length = 1104
Score = 75.5 bits (184), Expect = 4e-13
Identities = 34/55 (61%), Positives = 42/55 (75%)
Frame = -1
Query: 572 NGFRSFCIPPNELYRFSHQIPSYKMTGDEREGVPRGSFELDPAGLPLSLFEVHHS 408
+G IPP+++ RFSH++PS+KMTG EREGVP G FELDPA LP LFEV+ S
Sbjct: 641 DGVLQLQIPPSQMLRFSHKVPSFKMTGKEREGVPPGCFELDPAALPKELFEVYDS 695
>pir||T01797 hypothetical protein A_TM021B04.9 - Arabidopsis thaliana
gi|2191187|gb|AAB61072.1| contains similarity to a
DNAJ-like domain [Arabidopsis thaliana]
Length = 1609
Score = 75.5 bits (184), Expect = 4e-13
Identities = 34/55 (61%), Positives = 42/55 (75%)
Frame = -1
Query: 572 NGFRSFCIPPNELYRFSHQIPSYKMTGDEREGVPRGSFELDPAGLPLSLFEVHHS 408
+G IPP+++ RFSH++PS+KMTG EREGVP G FELDPA LP LFEV+ S
Sbjct: 641 DGVLQLQIPPSQMLRFSHKVPSFKMTGKEREGVPPGCFELDPAALPKELFEVYDS 695
>ref|NP_187147.1| hypothetical protein; protein id: At3g04960.1 [Arabidopsis
thaliana] gi|12322862|gb|AAG51424.1|AC009465_24
hypothetical protein; 31126-29176 [Arabidopsis thaliana]
Length = 603
Score = 66.6 bits (161), Expect = 2e-10
Identities = 29/46 (63%), Positives = 36/46 (78%)
Frame = -1
Query: 572 NGFRSFCIPPNELYRFSHQIPSYKMTGDEREGVPRGSFELDPAGLP 435
NG I +E+ RFSH++PS+KMTGDE+EGVP GSFELDPA +P
Sbjct: 538 NGLVEIMISCDEMLRFSHRVPSFKMTGDEKEGVPAGSFELDPAAVP 583
>ref|NP_187149.1| hypothetical protein, contains DnaJ motif: prokaryotic heat shock
protein motif; protein id: At3g04980.1 [Arabidopsis
thaliana] gi|12322856|gb|AAG51418.1|AC009465_18
hypothetical protein, contains DnaJ motif: prokaryotic
heat shock protein motif; 22764-26261 [Arabidopsis
thaliana]
Length = 1165
Score = 58.9 bits (141), Expect = 4e-08
Identities = 24/43 (55%), Positives = 33/43 (75%)
Frame = -1
Query: 545 PNELYRFSHQIPSYKMTGDEREGVPRGSFELDPAGLPLSLFEV 417
P ++ RFSH++P+ KMTG E+E VP S+ELDPA LP +F+V
Sbjct: 652 PKDMLRFSHKVPAVKMTGKEKESVPPNSYELDPAALPKDIFQV 694
>ref|NP_187285.1| putative DnaJ protein; protein id: At3g06340.1 [Arabidopsis
thaliana] gi|6437559|gb|AAF08586.1|AC011623_19 putative
DnaJ protein [Arabidopsis thaliana]
Length = 673
Score = 57.4 bits (137), Expect = 1e-07
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = -1
Query: 551 IPPNELYRFSHQIPSYKMTGDEREGVPRGSFELDPAGLPLSL 426
IPP+E RFSH IPS+++TG E G+ +G +ELDPA LP S+
Sbjct: 608 IPPHEFCRFSHSIPSFRLTGTEGRGITKGWYELDPAALPASV 649
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,739,310
Number of Sequences: 1393205
Number of extensions: 9390749
Number of successful extensions: 22537
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 21911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22524
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
