Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000323A_C01 KMC000323A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_297279.1| conserved hypothetical protein [Chlamydia murid... 35 0.78
gb|AAL90222.1| AT30101p [Drosophila melanogaster] 31 8.6
ref|NP_722826.1| CG31690-PB [Drosophila melanogaster] gi|2294537... 31 8.6
ref|NP_671801.1| similar to putative type II intron maturase; pr... 31 8.6
>ref|NP_297279.1| conserved hypothetical protein [Chlamydia muridarum]
gi|11360666|pir||A81651 conserved hypothetical protein
TC0906 [imported] - Chlamydia muridarum (strain Nigg)
gi|7190934|gb|AAF39699.1| conserved hypothetical protein
[Chlamydia muridarum]
Length = 419
Score = 34.7 bits (78), Expect = 0.78
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 347 YHVQPEYFVHLPPEISVLLPNGSW 276
YH YF +LPP +++LLP GSW
Sbjct: 23 YHCVSRYFHYLPPVLAILLPVGSW 46
>gb|AAL90222.1| AT30101p [Drosophila melanogaster]
Length = 849
Score = 31.2 bits (69), Expect = 8.6
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Frame = -3
Query: 262 FFGTQLVREEVKG----LSILA*RVRYVAGGLTSIGLNLGGLVILLQFTKCSY--RKCLL 101
F+GT LV G L +L+ R+ Y+AGG+T +G +L +++ T + + LL
Sbjct: 60 FWGTPLVDSGSHGSWRPLCVLSFRLNYLAGGMTPLGYHLVNVMLHCVATWLVFLVARTLL 119
Query: 100 PNRFRV 83
P+R V
Sbjct: 120 PSRMGV 125
>ref|NP_722826.1| CG31690-PB [Drosophila melanogaster] gi|22945377|gb|AAF51225.2|
CG31690-PB [Drosophila melanogaster]
Length = 849
Score = 31.2 bits (69), Expect = 8.6
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Frame = -3
Query: 262 FFGTQLVREEVKG----LSILA*RVRYVAGGLTSIGLNLGGLVILLQFTKCSY--RKCLL 101
F+GT LV G L +L+ R+ Y+AGG+T +G +L +++ T + + LL
Sbjct: 60 FWGTPLVDSGSHGSWRPLCVLSFRLNYLAGGMTPLGYHLVNVMLHCVATWLVFLVARTLL 119
Query: 100 PNRFRV 83
P+R V
Sbjct: 120 PSRMGV 125
>ref|NP_671801.1| similar to putative type II intron maturase; protein id:
At2g07747.1 [Arabidopsis thaliana]
Length = 325
Score = 31.2 bits (69), Expect = 8.6
Identities = 11/31 (35%), Positives = 19/31 (60%)
Frame = +1
Query: 295 RTLISGGKCTKYSGWT*YGRICVFELHNVRN 387
+ ++ G T +GW Y R+C ++L+ VRN
Sbjct: 23 KNILGKGSLTVLAGWELYERVCQYDLNEVRN 53
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,022,788
Number of Sequences: 1393205
Number of extensions: 9767755
Number of successful extensions: 29078
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29067
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
