Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000322A_C03 KMC000322A_c03
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9FEP8|LGB_LOTJA Leghemoglobin gi|11230993|dbj|BAB18108.1| le... 289 2e-77
dbj|BAA28597.1| leghemoglobin [Lotus japonicus] 266 2e-70
sp|P28010|LGB4_MEDSA Leghemoglobin gi|282905|pir||S28613 leghemo... 206 2e-52
gb|AAA03002.1| leghemoglobin 202 3e-51
sp|P14848|LGB2_SESRO Leghemoglobin 2 (Srglb2) gi|70612|pir||GPFJ... 201 8e-51
>sp|Q9FEP8|LGB_LOTJA Leghemoglobin gi|11230993|dbj|BAB18108.1| leghemoglobin [Lotus
japonicus]
Length = 147
Score = 289 bits (739), Expect = 2e-77
Identities = 147/147 (100%), Positives = 147/147 (100%)
Frame = -2
Query: 580 MGFTAQQEALVGSSYETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKESGPKHSPQLQA 401
MGFTAQQEALVGSSYETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKESGPKHSPQLQA
Sbjct: 1 MGFTAQQEALVGSSYETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKESGPKHSPQLQA 60
Query: 400 HAEKVFALTRDAATQLVAKGEVTLADASLGAVHVQKAVTDPHFVVVKEALLQTVKEAVGA 221
HAEKVFALTRDAATQLVAKGEVTLADASLGAVHVQKAVTDPHFVVVKEALLQTVKEAVGA
Sbjct: 61 HAEKVFALTRDAATQLVAKGEVTLADASLGAVHVQKAVTDPHFVVVKEALLQTVKEAVGA 120
Query: 220 DEWSDDLSTAWEGAYDGLATAIKKAMG 140
DEWSDDLSTAWEGAYDGLATAIKKAMG
Sbjct: 121 DEWSDDLSTAWEGAYDGLATAIKKAMG 147
>dbj|BAA28597.1| leghemoglobin [Lotus japonicus]
Length = 137
Score = 266 bits (679), Expect = 2e-70
Identities = 134/136 (98%), Positives = 135/136 (98%)
Frame = -2
Query: 547 GSSYETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKESGPKHSPQLQAHAEKVFALTRD 368
G +YETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKESGPKHSPQLQAHAEKVFALTRD
Sbjct: 2 GGAYETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKESGPKHSPQLQAHAEKVFALTRD 61
Query: 367 AATQLVAKGEVTLADASLGAVHVQKAVTDPHFVVVKEALLQTVKEAVGADEWSDDLSTAW 188
AATQLVAKGEVTLADASLGAVHVQKAVTDPHFVVVKEALLQTVKEAVGADEWSDDLSTAW
Sbjct: 62 AATQLVAKGEVTLADASLGAVHVQKAVTDPHFVVVKEALLQTVKEAVGADEWSDDLSTAW 121
Query: 187 EGAYDGLATAIKKAMG 140
EGAYDGLATAIKKAMG
Sbjct: 122 EGAYDGLATAIKKAMG 137
>sp|P28010|LGB4_MEDSA Leghemoglobin gi|282905|pir||S28613 leghemoglobin MsLb3 - alfalfa
gi|166396|gb|AAB48005.1| leghemoglobin [Medicago sativa]
Length = 147
Score = 206 bits (523), Expect = 2e-52
Identities = 106/147 (72%), Positives = 124/147 (84%), Gaps = 1/147 (0%)
Frame = -2
Query: 580 MGFTAQQEALVGSSYETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKES-GPKHSPQLQ 404
MGFTA QEALV SS+E+FK+NLP SV FYT ILE AP AK MFSFLK+S G + SPQLQ
Sbjct: 1 MGFTADQEALVNSSWESFKQNLPGYSVFFYTTILEKAPAAKGMFSFLKDSAGVQDSPQLQ 60
Query: 403 AHAEKVFALTRDAATQLVAKGEVTLADASLGAVHVQKAVTDPHFVVVKEALLQTVKEAVG 224
AHAEKVF + RD+A QL A GEV L DA+LG++H+QK V DPHFVVVKEALL+T+KEAVG
Sbjct: 61 AHAEKVFGMVRDSAVQLRATGEVVLGDATLGSIHIQKGVVDPHFVVVKEALLKTIKEAVG 120
Query: 223 ADEWSDDLSTAWEGAYDGLATAIKKAM 143
D+WS++LST+WE AYDGLA+AIKKAM
Sbjct: 121 -DKWSEELSTSWEVAYDGLASAIKKAM 146
>gb|AAA03002.1| leghemoglobin
Length = 154
Score = 202 bits (514), Expect = 3e-51
Identities = 107/153 (69%), Positives = 123/153 (79%), Gaps = 2/153 (1%)
Frame = -2
Query: 595 KRKRKMGFTAQQEALVGSSYETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKESG--PK 422
K+ + MGFT +QEALV +SYE FKKNLP +SVLFY+ ILE P AK +FSFLK+S P+
Sbjct: 2 KKTKNMGFTDKQEALVNTSYEAFKKNLPGHSVLFYSFILEKEPAAKGLFSFLKDSDGVPQ 61
Query: 421 HSPQLQAHAEKVFALTRDAATQLVAKGEVTLADASLGAVHVQKAVTDPHFVVVKEALLQT 242
++P LQAHAEKVF L DAA QL A G V LADASLG+VHVQK VTDPHFVVVKEALL+T
Sbjct: 62 NNPSLQAHAEKVFGLVHDAAAQLRATGVVVLADASLGSVHVQKGVTDPHFVVVKEALLKT 121
Query: 241 VKEAVGADEWSDDLSTAWEGAYDGLATAIKKAM 143
+KEA GA WSD++S AWE AYDGLA AIKKAM
Sbjct: 122 LKEAAGA-TWSDEVSIAWEVAYDGLAAAIKKAM 153
>sp|P14848|LGB2_SESRO Leghemoglobin 2 (Srglb2) gi|70612|pir||GPFJG2 leghemoglobin glb2 -
Sesbania rostrata gi|21375|emb|CAA32044.1| leghemoglobin
[Sesbania rostrata] gi|21382|emb|CAA31859.1|
leghemoglobin [Sesbania rostrata]
Length = 148
Score = 201 bits (510), Expect = 8e-51
Identities = 106/148 (71%), Positives = 121/148 (81%), Gaps = 2/148 (1%)
Frame = -2
Query: 580 MGFTAQQEALVGSSYETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKESG--PKHSPQL 407
MGFT +QEALV +SYE FK+NLP NSVLFY+ ILE AP AK MFSFLK+S P+++P L
Sbjct: 1 MGFTEKQEALVNASYEAFKQNLPGNSVLFYSFILEKAPAAKGMFSFLKDSDGVPQNNPSL 60
Query: 406 QAHAEKVFALTRDAATQLVAKGEVTLADASLGAVHVQKAVTDPHFVVVKEALLQTVKEAV 227
QAHAEKVF L RD+A QL A G V LADASLG+VHVQK V DPHFVVVKEALL+T+KEA
Sbjct: 61 QAHAEKVFGLVRDSAAQLRATGVVVLADASLGSVHVQKGVLDPHFVVVKEALLKTLKEAA 120
Query: 226 GADEWSDDLSTAWEGAYDGLATAIKKAM 143
GA WSD++S AWE AYDGL+ AIKKAM
Sbjct: 121 GA-TWSDEVSNAWEVAYDGLSAAIKKAM 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,452,114
Number of Sequences: 1393205
Number of extensions: 10716766
Number of successful extensions: 26649
Number of sequences better than 10.0: 213
Number of HSP's better than 10.0 without gapping: 25188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26353
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
