Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000321A_C01 KMC000321A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567510.1| HSP like protein; protein id: At4g16660.1, supp... 100 3e-20
gb|AAK93685.1| putative HSP protein [Arabidopsis thaliana] 100 3e-20
pir||E85185 HSP like protein [imported] - Arabidopsis thaliana g... 100 3e-20
pir||G71433 probable heat shock protein 110 - Arabidopsis thaliana 62 7e-09
gb|AAH47807.1| Similar to oxygen regulated protein (150kD) [Dani... 44 0.002
>ref|NP_567510.1| HSP like protein; protein id: At4g16660.1, supported by cDNA:
gi_15293148 [Arabidopsis thaliana]
Length = 867
Score = 99.8 bits (247), Expect = 3e-20
Identities = 52/87 (59%), Positives = 64/87 (72%), Gaps = 2/87 (2%)
Frame = -2
Query: 661 EKLKSWLDEKEAEQKKTSGFSKPAFTSEEAYLKVFDLQNKVANINKIPKPKPKIQKPTK- 485
EK+KSWLD+ AEQ+KTS +SKP FTS E Y KVF LQ+KV +NKIPKPKPKI+K TK
Sbjct: 782 EKVKSWLDKNVAEQEKTSLWSKPVFTSTEVYAKVFTLQDKVTKVNKIPKPKPKIEKVTKT 841
Query: 484 -NESESSGQNTDSDEKVDEQPEAHDEL 407
N ++ Q+ SDE E+ E+HDEL
Sbjct: 842 ENTTKEEEQSKSSDEAAKEE-ESHDEL 867
>gb|AAK93685.1| putative HSP protein [Arabidopsis thaliana]
Length = 867
Score = 99.8 bits (247), Expect = 3e-20
Identities = 52/87 (59%), Positives = 64/87 (72%), Gaps = 2/87 (2%)
Frame = -2
Query: 661 EKLKSWLDEKEAEQKKTSGFSKPAFTSEEAYLKVFDLQNKVANINKIPKPKPKIQKPTK- 485
EK+KSWLD+ AEQ+KTS +SKP FTS E Y KVF LQ+KV +NKIPKPKPKI+K TK
Sbjct: 782 EKVKSWLDKNVAEQEKTSLWSKPVFTSTEVYAKVFTLQDKVTKVNKIPKPKPKIEKVTKT 841
Query: 484 -NESESSGQNTDSDEKVDEQPEAHDEL 407
N ++ Q+ SDE E+ E+HDEL
Sbjct: 842 ENTTKEEEQSKSSDEAAKEE-ESHDEL 867
>pir||E85185 HSP like protein [imported] - Arabidopsis thaliana
gi|5302797|emb|CAB46039.1| HSP like protein [Arabidopsis
thaliana] gi|7268416|emb|CAB78708.1| HSP like protein
[Arabidopsis thaliana]
Length = 331
Score = 99.8 bits (247), Expect = 3e-20
Identities = 52/87 (59%), Positives = 64/87 (72%), Gaps = 2/87 (2%)
Frame = -2
Query: 661 EKLKSWLDEKEAEQKKTSGFSKPAFTSEEAYLKVFDLQNKVANINKIPKPKPKIQKPTK- 485
EK+KSWLD+ AEQ+KTS +SKP FTS E Y KVF LQ+KV +NKIPKPKPKI+K TK
Sbjct: 246 EKVKSWLDKNVAEQEKTSLWSKPVFTSTEVYAKVFTLQDKVTKVNKIPKPKPKIEKVTKT 305
Query: 484 -NESESSGQNTDSDEKVDEQPEAHDEL 407
N ++ Q+ SDE E+ E+HDEL
Sbjct: 306 ENTTKEEEQSKSSDEAAKEE-ESHDEL 331
>pir||G71433 probable heat shock protein 110 - Arabidopsis thaliana
Length = 290
Score = 62.0 bits (149), Expect = 7e-09
Identities = 29/45 (64%), Positives = 35/45 (77%)
Frame = -2
Query: 661 EKLKSWLDEKEAEQKKTSGFSKPAFTSEEAYLKVFDLQNKVANIN 527
EK+KSWLD+ AEQ+KTS +SKP FTS E Y KVF LQ+KV +N
Sbjct: 246 EKVKSWLDKNVAEQEKTSLWSKPVFTSTEVYAKVFTLQDKVTKVN 290
>gb|AAH47807.1| Similar to oxygen regulated protein (150kD) [Danio rerio]
Length = 980
Score = 43.9 bits (102), Expect = 0.002
Identities = 34/76 (44%), Positives = 42/76 (54%), Gaps = 5/76 (6%)
Frame = -2
Query: 649 SWLDEKEAEQKKTSGFSKPAFTSE--EAYLKVFDLQ-NKVANINKIPKPKPKIQKPTKNE 479
+W +E AEQ+K S KP S+ EA L + D + N + N K KPKPK + KN
Sbjct: 847 TWKNETVAEQEKLSPTVKPVLLSKDIEAKLSLLDREVNYLLNKAKFAKPKPKDKAKDKNS 906
Query: 478 -SESSGQN-TDSDEKV 437
SESS N TD EKV
Sbjct: 907 TSESSKANSTDDAEKV 922
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,871,995
Number of Sequences: 1393205
Number of extensions: 10990631
Number of successful extensions: 30346
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 28329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30169
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
