Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000317A_C01 KMC000317A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173002.1| unknown protein; protein id: At1g15490.1, suppo... 76 3e-13
ref|NP_178144.1| unknown protein; protein id: At1g80280.1, suppo... 75 6e-13
dbj|BAC00606.1| OJ1316_H05.1 [Oryza sativa (japonica cultivar-gr... 70 1e-11
ref|NP_175684.2| unknown protein; protein id: At1g52750.1, suppo... 64 9e-10
pir||E96568 unknown protein, 18223-15857 [imported] - Arabidopsi... 64 9e-10
>ref|NP_173002.1| unknown protein; protein id: At1g15490.1, supported by cDNA:
gi_17529297 [Arabidopsis thaliana]
gi|5103847|gb|AAD39677.1|AC007591_42 Contains PF|00561
alpha/beta hydrolase fold. [Arabidopsis thaliana]
gi|17529298|gb|AAL38876.1| unknown protein [Arabidopsis
thaliana] gi|26983890|gb|AAN86197.1| unknown protein
[Arabidopsis thaliana]
Length = 648
Score = 75.9 bits (185), Expect = 3e-13
Identities = 38/53 (71%), Positives = 43/53 (80%)
Frame = -1
Query: 531 KSCQAMASKFVNSRLVAISGCGHLPHEECPKALLAAILAFISKLFSVYNSQSQ 373
KS Q MASK +NSRLVAISGCGHLPHEECPKALLAA+ FI++L + QSQ
Sbjct: 596 KSSQGMASKLLNSRLVAISGCGHLPHEECPKALLAAMSPFITRLVIRPDLQSQ 648
>ref|NP_178144.1| unknown protein; protein id: At1g80280.1, supported by cDNA:
gi_20466449 [Arabidopsis thaliana]
gi|25406649|pir||C96834 unknown protein F5I6.3
[imported] - Arabidopsis thaliana
gi|12324976|gb|AAG52432.1|AC018848_3 unknown protein;
13661-11359 [Arabidopsis thaliana]
gi|20466450|gb|AAM20542.1| unknown protein [Arabidopsis
thaliana] gi|23198130|gb|AAN15592.1| unknown protein
[Arabidopsis thaliana]
Length = 647
Score = 74.7 bits (182), Expect = 6e-13
Identities = 36/44 (81%), Positives = 38/44 (85%)
Frame = -1
Query: 531 KSCQAMASKFVNSRLVAISGCGHLPHEECPKALLAAILAFISKL 400
KS Q MASK NSRLVAISGCGHLPHEECPKALLAA+ FIS+L
Sbjct: 599 KSSQVMASKLENSRLVAISGCGHLPHEECPKALLAAMCPFISRL 642
>dbj|BAC00606.1| OJ1316_H05.1 [Oryza sativa (japonica cultivar-group)]
gi|21901991|dbj|BAC05542.1| P0038D11.18 [Oryza sativa
(japonica cultivar-group)]
Length = 629
Score = 70.5 bits (171), Expect = 1e-11
Identities = 34/46 (73%), Positives = 37/46 (79%)
Frame = -1
Query: 531 KSCQAMASKFVNSRLVAISGCGHLPHEECPKALLAAILAFISKLFS 394
KS Q MAS+ VNSRLV IS CGHLPHEECPKALL+A+ FIS L S
Sbjct: 576 KSTQVMASRLVNSRLVTISNCGHLPHEECPKALLSALSPFISGLVS 621
>ref|NP_175684.2| unknown protein; protein id: At1g52750.1, supported by cDNA:
gi_19310417 [Arabidopsis thaliana]
gi|19310418|gb|AAL84946.1| At1g52750/F14G24_2
[Arabidopsis thaliana] gi|23506029|gb|AAN28874.1|
At1g52750/F14G24_2 [Arabidopsis thaliana]
Length = 523
Score = 64.3 bits (155), Expect = 9e-10
Identities = 29/44 (65%), Positives = 35/44 (78%)
Frame = -1
Query: 531 KSCQAMASKFVNSRLVAISGCGHLPHEECPKALLAAILAFISKL 400
KS Q +ASK NSRLV ISGCGHLPHEECP L++A+ +FI +L
Sbjct: 473 KSSQVLASKLTNSRLVEISGCGHLPHEECPTTLVSALGSFICRL 516
>pir||E96568 unknown protein, 18223-15857 [imported] - Arabidopsis thaliana
gi|12324631|gb|AAG52267.1|AC019018_4 unknown protein;
18223-15857 [Arabidopsis thaliana]
Length = 614
Score = 64.3 bits (155), Expect = 9e-10
Identities = 29/44 (65%), Positives = 35/44 (78%)
Frame = -1
Query: 531 KSCQAMASKFVNSRLVAISGCGHLPHEECPKALLAAILAFISKL 400
KS Q +ASK NSRLV ISGCGHLPHEECP L++A+ +FI +L
Sbjct: 564 KSSQVLASKLTNSRLVEISGCGHLPHEECPTTLVSALGSFICRL 607
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,630,227
Number of Sequences: 1393205
Number of extensions: 8867601
Number of successful extensions: 29527
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 25972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28345
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
