Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000315A_C01 KMC000315A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF63657.1|AF118113_1 MFP1 attachment factor 1 [Lycopersicon ... 131 6e-30
gb|AAF63659.1|AF118115_1 MFP1 attachment factor 1 [Glycine max] 122 2e-27
ref|NP_564498.1| expressed protein; protein id: At1g47200.1, sup... 114 1e-24
gb|AAM62902.1| unknown [Arabidopsis thaliana] 112 3e-24
ref|NP_199121.1| putative protein; protein id: At5g43070.1, supp... 108 4e-23
>gb|AAF63657.1|AF118113_1 MFP1 attachment factor 1 [Lycopersicon esculentum]
Length = 152
Score = 131 bits (329), Expect = 6e-30
Identities = 74/112 (66%), Positives = 85/112 (75%)
Frame = -3
Query: 546 TRDAVINRLIETLSTPSVLSKRYGTMPADEASAAARQIEDEAFAAAGGSAAADTDGIEIL 367
TRDAVINRLIE+LSTPS+LSKRYGT+P DEAS AR IE+EAFAAAG +A+ DGIEIL
Sbjct: 35 TRDAVINRLIESLSTPSILSKRYGTLPQDEASETARLIEEEAFAAAGSTASDADDGIEIL 94
Query: 366 QVYSKEISKRMLDSVKSRATTGSAAADNGASDVPPSPSPAEEDAPPAADSET 211
QVYSKEISKRM+D+VKSR + AAA G S PS PA+ P +A T
Sbjct: 95 QVYSKEISKRMIDTVKSR--SAPAAASEGES--KPSELPADASEPSSASGLT 142
>gb|AAF63659.1|AF118115_1 MFP1 attachment factor 1 [Glycine max]
Length = 135
Score = 122 bits (307), Expect = 2e-27
Identities = 68/94 (72%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Frame = -3
Query: 546 TRDAVINRLIETLSTPSVLSKRYGTMPADEASAAARQIEDEAF-AAAGGSAAADTDGIEI 370
TRDAV+ RLIETLS PSVLSKRYGT+ +DEASAAARQIEDEAF AA SA+A DGIE
Sbjct: 40 TRDAVVKRLIETLSAPSVLSKRYGTLSSDEASAAARQIEDEAFCAATAASASAAADGIET 99
Query: 369 LQVYSKEISKRMLDSVKSRATTGSAAADNGASDV 268
LQVYSKEISKRMLD+VK+RA AA + A+ V
Sbjct: 100 LQVYSKEISKRMLDTVKARAPPSPAAVEGVAAAV 133
>ref|NP_564498.1| expressed protein; protein id: At1g47200.1, supported by cDNA:
17075., supported by cDNA: gi_18176024, supported by
cDNA: gi_20465926 [Arabidopsis thaliana]
gi|25405189|pir||F96512 unknown protein, 31600-32142
[imported] - Arabidopsis thaliana
gi|12320998|gb|AAG50616.1|AC083835_1 unknown protein
[Arabidopsis thaliana]
gi|12325398|gb|AAG52640.1|AC079677_4 unknown protein;
31600-32142 [Arabidopsis thaliana]
gi|18176025|gb|AAL59970.1| unknown protein [Arabidopsis
thaliana] gi|20465927|gb|AAM20116.1| unknown protein
[Arabidopsis thaliana]
Length = 180
Score = 114 bits (284), Expect = 1e-24
Identities = 58/113 (51%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Frame = -3
Query: 546 TRDAVINRLIETLSTPSVLSKRYGTMPADEASAAARQIEDEAFAAAGGSAAADTDGIEIL 367
TRDAV+NRLIETLST S+LSKRYGT+ +D+A+ A+ IE+EA+ A + ++D DGI+IL
Sbjct: 67 TRDAVLNRLIETLSTESILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKIL 126
Query: 366 QVYSKEISKRMLDSVKSR--ATTGSAAADNGASDVPPSPSPAEEDAPPAADSE 214
++YSKEISKRML+SVK+R A+ G+ + ++ +D + +++DA PA++ E
Sbjct: 127 ELYSKEISKRMLESVKARSNASVGNGSVEDANTD---ASEVSKDDAGPASEEE 176
>gb|AAM62902.1| unknown [Arabidopsis thaliana]
Length = 180
Score = 112 bits (280), Expect = 3e-24
Identities = 57/113 (50%), Positives = 86/113 (75%), Gaps = 2/113 (1%)
Frame = -3
Query: 546 TRDAVINRLIETLSTPSVLSKRYGTMPADEASAAARQIEDEAFAAAGGSAAADTDGIEIL 367
TRDAV+NRLIETLST S+LSKRYGT+ +D+A+ A+ IE+EA+ A + ++D DGI+IL
Sbjct: 67 TRDAVLNRLIETLSTESILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKIL 126
Query: 366 QVYSKEISKRMLDSVKSR--ATTGSAAADNGASDVPPSPSPAEEDAPPAADSE 214
++YSKEISKRML+SVK+R A+ G+ + ++ +D + +++DA P ++ E
Sbjct: 127 ELYSKEISKRMLESVKARSNASVGNGSVEDANTD---ASEVSKDDAGPGSEEE 176
>ref|NP_199121.1| putative protein; protein id: At5g43070.1, supported by cDNA: 9731.
[Arabidopsis thaliana] gi|9757834|dbj|BAB08271.1|
contains similarity to MFP1 attachment factor
1~gene_id:MMG4.9 [Arabidopsis thaliana]
Length = 155
Score = 108 bits (270), Expect = 4e-23
Identities = 54/89 (60%), Positives = 70/89 (77%)
Frame = -3
Query: 546 TRDAVINRLIETLSTPSVLSKRYGTMPADEASAAARQIEDEAFAAAGGSAAADTDGIEIL 367
TRDAVINRLIETLST S+LSKR+G++ ++EAS+ A+ IEDEA+A A + D DGIEIL
Sbjct: 51 TRDAVINRLIETLSTESILSKRFGSLESEEASSVAKSIEDEAYAIASATVFGDDDGIEIL 110
Query: 366 QVYSKEISKRMLDSVKSRATTGSAAADNG 280
+ YSKEISKRML+SVK+++ S +G
Sbjct: 111 KAYSKEISKRMLESVKAKSNVASPPPKDG 139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,625,413
Number of Sequences: 1393205
Number of extensions: 13717008
Number of successful extensions: 114665
Number of sequences better than 10.0: 1773
Number of HSP's better than 10.0 without gapping: 74181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103825
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
