Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000314A_C01 KMC000314A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190681.1| putative protein; protein id: At3g51120.1 [Arab... 55 8e-07
ref|NP_194274.1| putative protein; protein id: At4g25440.1 [Arab... 39 0.037
emb|CAC19847.1| zfwd1 protein [Arabidopsis thaliana] 39 0.037
emb|CAC19848.1| zfwd2 protein [Arabidopsis thaliana] 37 0.24
ref|NP_200011.1| putative protein; protein id: At5g51980.1 [Arab... 37 0.24
>ref|NP_190681.1| putative protein; protein id: At3g51120.1 [Arabidopsis thaliana]
gi|11290564|pir||T45743 hypothetical protein F24M12.160 -
Arabidopsis thaliana gi|6562264|emb|CAB62634.1| putative
protein [Arabidopsis thaliana]
Length = 1247
Score = 54.7 bits (130), Expect = 8e-07
Identities = 47/135 (34%), Positives = 60/135 (43%), Gaps = 6/135 (4%)
Frame = -3
Query: 568 TTWRLGLENTHLGWGGMDQRETNTSWGVGQMEVHENRSTNSYTSVVAPGLGDGQTRYGSD 389
T RLG E T G +R + GV RS +S+ S A G + R
Sbjct: 1117 TALRLGSETTVEA--GTVERLPKSVLGVSSEP--SPRSLSSHDSSSARGSTERSPRVSQP 1172
Query: 388 RYSV--PRDRSFPGPGRESGFGRVRTASNRP--SLFGVGNG-GSYRPSP-QGQRVCKFYE 227
+ S RDR + G S F P + G +G GSY P +G ++CKFYE
Sbjct: 1173 KRSSGHSRDRQWLNNGHNSSFNNSHNNRQWPYSNSHGYDHGSGSYAAHPPKGLKICKFYE 1232
Query: 226 SGYCKKGASCGLLAP 182
SGYCK+GASC P
Sbjct: 1233 SGYCKRGASCSFWHP 1247
>ref|NP_194274.1| putative protein; protein id: At4g25440.1 [Arabidopsis thaliana]
gi|7486814|pir||T05803 hypothetical protein M7J2.190 -
Arabidopsis thaliana gi|2980806|emb|CAA18182.1| putative
protein [Arabidopsis thaliana]
Length = 668
Score = 39.3 bits (90), Expect = 0.037
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Frame = -3
Query: 526 GGMDQRETNTS-------WGVGQMEVHENRSTNSYTSVVAPGLGDGQTRYGSDRYSVPRD 368
GG R T S W G+ NR Y PG G G S++ V +
Sbjct: 17 GGGSNRPTTDSNQKVCFHWRAGRC----NRYPCPYLHRELPGPGSGPVAASSNK-RVADE 71
Query: 367 RSFPGPGRESGFGRVRTASNRPSLFGVGNGGSYRPSPQGQRVCKFYESGYCKKGASCGLL 188
F GP G G TA+N G G R + +++CKF+ G C G C L
Sbjct: 72 SGFAGPSHRRGPGFSGTANNW------GRFGGNRTVTKTEKLCKFWVDGNCPYGDKCRYL 125
>emb|CAC19847.1| zfwd1 protein [Arabidopsis thaliana]
Length = 430
Score = 39.3 bits (90), Expect = 0.037
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Frame = -3
Query: 526 GGMDQRETNTS-------WGVGQMEVHENRSTNSYTSVVAPGLGDGQTRYGSDRYSVPRD 368
GG R T S W G+ NR Y PG G G S++ V +
Sbjct: 17 GGGSNRPTTDSNQKVCFHWRAGRC----NRYPCPYLHRELPGPGSGPVAASSNK-RVADE 71
Query: 367 RSFPGPGRESGFGRVRTASNRPSLFGVGNGGSYRPSPQGQRVCKFYESGYCKKGASCGLL 188
F GP G G TA+N G G R + +++CKF+ G C G C L
Sbjct: 72 SGFAGPSHRRGPGFSGTANNW------GRFGGNRTVTKTEKLCKFWVDGNCPYGDKCRYL 125
>emb|CAC19848.1| zfwd2 protein [Arabidopsis thaliana]
Length = 443
Score = 36.6 bits (83), Expect = 0.24
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = -3
Query: 463 NRSTNSYTSVVAPGLGDGQTRY-GSDRYSVPRDRSFPGPGRESGFGRVRTASNRPSLFGV 287
NRS Y PG G GQ + G V + F GP G G +S+ FG
Sbjct: 45 NRSPCPYLHRELPGPGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFNGNSSSSWGRFG- 103
Query: 286 GNGGSYRPSPQGQRVCKFYESGYCKKGASCGLL 188
GN R + ++VC F+ G C G C L
Sbjct: 104 GN----RTVTKTEKVCNFWVDGNCTYGDKCRYL 132
>ref|NP_200011.1| putative protein; protein id: At5g51980.1 [Arabidopsis thaliana]
gi|10177733|dbj|BAB11046.1| contains similarity to
myosin heavy chain kinase~gene_id:MSG15.6 [Arabidopsis
thaliana]
Length = 437
Score = 36.6 bits (83), Expect = 0.24
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = -3
Query: 463 NRSTNSYTSVVAPGLGDGQTRY-GSDRYSVPRDRSFPGPGRESGFGRVRTASNRPSLFGV 287
NRS Y PG G GQ + G V + F GP G G +S+ FG
Sbjct: 45 NRSPCPYLHRELPGPGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFNGNSSSSWGRFG- 103
Query: 286 GNGGSYRPSPQGQRVCKFYESGYCKKGASCGLL 188
GN R + ++VC F+ G C G C L
Sbjct: 104 GN----RTVTKTEKVCNFWVDGNCTYGDKCRYL 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 589,235,831
Number of Sequences: 1393205
Number of extensions: 15038293
Number of successful extensions: 40696
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 38681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40647
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
