Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000313A_C01 KMC000313A_c01
(716 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB21077.1| P0501G01.6 [Oryza sativa (japonica cultivar-group)] 169 4e-41
pir||H85015 hypothetical protein AT4g01210 [imported] - Arabidop... 157 1e-37
dbj|BAC42745.1| unknown protein [Arabidopsis thaliana] 157 1e-37
ref|NP_192030.1| hypothetical protein; protein id: At4g01210.1 [... 157 1e-37
pir||T01722 hypothetical protein A_IG002N01.24 - Arabidopsis tha... 155 5e-37
>dbj|BAB21077.1| P0501G01.6 [Oryza sativa (japonica cultivar-group)]
Length = 1002
Score = 169 bits (428), Expect = 4e-41
Identities = 76/120 (63%), Positives = 96/120 (79%)
Frame = -2
Query: 694 VNPETGLMQEQHKFKSRRGQMWIQWFSYNTLKSMDEDLAELSDSEDPNRHWLWPSTGEVF 515
V+PETG MQEQH RRGQM IQWFS TLKSMDEDLAE D + P+R WLWP TGEVF
Sbjct: 882 VDPETGAMQEQHLLNGRRGQMSIQWFSLATLKSMDEDLAEEFDEDHPDRRWLWPKTGEVF 941
Query: 514 WQGLYERERNLRQKEKEKRKQKSMEKLYRMRKRHRQQVIGKYVKPPPEEESSNSSSLAVN 335
WQG+YERERN+RQ+EKE+RKQ+S +K+ R++KR RQ+ +G+Y+KPPPE+ S + + V+
Sbjct: 942 WQGVYERERNMRQQEKERRKQQSKDKIQRIKKRARQKTLGRYIKPPPEDAGSLNDTRTVD 1001
>pir||H85015 hypothetical protein AT4g01210 [imported] - Arabidopsis thaliana
gi|7267618|emb|CAB80930.1| hypothetical protein
[Arabidopsis thaliana]
Length = 963
Score = 157 bits (397), Expect = 1e-37
Identities = 72/121 (59%), Positives = 94/121 (77%), Gaps = 1/121 (0%)
Frame = -2
Query: 694 VNPETGLMQEQHKFKSRRGQMWIQWFSYNTLKSMDEDLAELSDSEDPNRHWLWPSTGEVF 515
++PETGLMQEQHK K+RRG+MW++WF Y TLK+MDEDLAE +DS+ HWLWP TGE+
Sbjct: 839 IDPETGLMQEQHKQKNRRGKMWVKWFDYTTLKTMDEDLAEEADSDRRVGHWLWPWTGEIV 898
Query: 514 WQGLYERERNLRQKEKEKRKQKSMEKLYRMRKRH-RQQVIGKYVKPPPEEESSNSSSLAV 338
W+G E+E+ + EKE++K+KS +KL RMR R RQ+VIGKYVKPPPE E+ +S +
Sbjct: 899 WRGTLEKEKQKKNLEKEEKKKKSRDKLSRMRSRSGRQKVIGKYVKPPPENETVTGNSTLL 958
Query: 337 N 335
N
Sbjct: 959 N 959
>dbj|BAC42745.1| unknown protein [Arabidopsis thaliana]
Length = 253
Score = 157 bits (397), Expect = 1e-37
Identities = 72/121 (59%), Positives = 94/121 (77%), Gaps = 1/121 (0%)
Frame = -2
Query: 694 VNPETGLMQEQHKFKSRRGQMWIQWFSYNTLKSMDEDLAELSDSEDPNRHWLWPSTGEVF 515
++PETGLMQEQHK K+RRG+MW++WF Y TLK+MDEDLAE +DS+ HWLWP TGE+
Sbjct: 129 IDPETGLMQEQHKQKNRRGKMWVKWFDYTTLKTMDEDLAEEADSDRRVGHWLWPWTGEIV 188
Query: 514 WQGLYERERNLRQKEKEKRKQKSMEKLYRMRKRH-RQQVIGKYVKPPPEEESSNSSSLAV 338
W+G E+E+ + EKE++K+KS +KL RMR R RQ+VIGKYVKPPPE E+ +S +
Sbjct: 189 WRGTLEKEKQKKNLEKEEKKKKSRDKLSRMRSRSGRQKVIGKYVKPPPENETVTGNSTLL 248
Query: 337 N 335
N
Sbjct: 249 N 249
>ref|NP_192030.1| hypothetical protein; protein id: At4g01210.1 [Arabidopsis thaliana]
Length = 981
Score = 157 bits (397), Expect = 1e-37
Identities = 72/121 (59%), Positives = 94/121 (77%), Gaps = 1/121 (0%)
Frame = -2
Query: 694 VNPETGLMQEQHKFKSRRGQMWIQWFSYNTLKSMDEDLAELSDSEDPNRHWLWPSTGEVF 515
++PETGLMQEQHK K+RRG+MW++WF Y TLK+MDEDLAE +DS+ HWLWP TGE+
Sbjct: 857 IDPETGLMQEQHKQKNRRGKMWVKWFDYTTLKTMDEDLAEEADSDRRVGHWLWPWTGEIV 916
Query: 514 WQGLYERERNLRQKEKEKRKQKSMEKLYRMRKRH-RQQVIGKYVKPPPEEESSNSSSLAV 338
W+G E+E+ + EKE++K+KS +KL RMR R RQ+VIGKYVKPPPE E+ +S +
Sbjct: 917 WRGTLEKEKQKKNLEKEEKKKKSRDKLSRMRSRSGRQKVIGKYVKPPPENETVTGNSTLL 976
Query: 337 N 335
N
Sbjct: 977 N 977
>pir||T01722 hypothetical protein A_IG002N01.24 - Arabidopsis thaliana
gi|2191144|gb|AAB61031.1| A_IG002N01.24 gene product
[Arabidopsis thaliana]
Length = 981
Score = 155 bits (392), Expect = 5e-37
Identities = 72/123 (58%), Positives = 94/123 (75%), Gaps = 1/123 (0%)
Frame = -2
Query: 694 VNPETGLMQEQHKFKSRRGQMWIQWFSYNTLKSMDEDLAELSDSEDPNRHWLWPSTGEVF 515
++PETGLMQEQHK K+RRG+MW++WF Y TLK+MDEDLAE +DS+ HWLWP TGE+
Sbjct: 682 IDPETGLMQEQHKQKNRRGKMWVKWFDYTTLKTMDEDLAEEADSDRRVGHWLWPWTGEIV 741
Query: 514 WQGLYERERNLRQKEKEKRKQKSMEKLYRMRKRH-RQQVIGKYVKPPPEEESSNSSSLAV 338
W+G E+E+ + EKE++K+KS +KL RMR R RQ+VIGKYVKPPPE E+ + L+
Sbjct: 742 WRGTLEKEKQKKNLEKEEKKKKSRDKLSRMRSRSGRQKVIGKYVKPPPENETVSPEFLSS 801
Query: 337 NAS 329
S
Sbjct: 802 ETS 804
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,121,781
Number of Sequences: 1393205
Number of extensions: 12009679
Number of successful extensions: 43072
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 37059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41466
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
