Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000312A_C01 KMC000312A_c01
(727 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA84613.1| unnamed protein product [Oryza sativa (japonica ... 110 5e-39
ref|NP_198055.1| putative protein; protein id: At5g27030.1 [Arab... 108 7e-32
gb|AAO42071.1| unknown protein [Arabidopsis thaliana] gi|2882770... 108 7e-32
pir||T01778 hypothetical protein A_IG002P16.14 - Arabidopsis tha... 104 8e-31
dbj|BAC57818.1| P0577B11.15 [Oryza sativa (japonica cultivar-gro... 101 1e-26
>dbj|BAA84613.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 930
Score = 110 bits (276), Expect(2) = 5e-39
Identities = 53/84 (63%), Positives = 67/84 (79%)
Frame = -1
Query: 727 DRIRQWVPQDVLSAPISCAAYSCDSQLIYATFCDANIGVFDADSLRLRCRIAPSVCLSSA 548
+RI QW+PQD LSAPIS A+YS +SQL++A F D NIG+FD ++LRLRCRIAP LSSA
Sbjct: 796 ERIYQWIPQDALSAPISHASYSRNSQLVFAAFTDGNIGIFDVENLRLRCRIAPPAYLSSA 855
Query: 547 ALSGSHAVYPLVVAANPLAPNPFA 476
A++ + +VYPLVVAA+P N FA
Sbjct: 856 AINSNPSVYPLVVAAHPQESNQFA 879
Score = 72.8 bits (177), Expect(2) = 5e-39
Identities = 34/50 (68%), Positives = 40/50 (80%)
Frame = -3
Query: 473 LALTDGSVKVIEPTESEGKWGSFPPMDNGKLNGRTASSSTTSNHTADQAQ 324
+ L+DGSVKVIEP ESEGKWG+ PP +NG NGRT++SS TSN ADQ Q
Sbjct: 880 VGLSDGSVKVIEPLESEGKWGTTPPTENGVPNGRTSTSSATSNPAADQIQ 929
>ref|NP_198055.1| putative protein; protein id: At5g27030.1 [Arabidopsis thaliana]
Length = 1167
Score = 108 bits (269), Expect(2) = 7e-32
Identities = 55/82 (67%), Positives = 62/82 (75%)
Frame = -1
Query: 721 IRQWVPQDVLSAPISCAAYSCDSQLIYATFCDANIGVFDADSLRLRCRIAPSVCLSSAAL 542
IRQW+PQD LSAPIS A Y+C+SQLIY TF D NIGVFDADSLRLRCRI+PS L
Sbjct: 1045 IRQWIPQDSLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLP---- 1100
Query: 541 SGSHAVYPLVVAANPLAPNPFA 476
G+ + PLVVAA+P PN FA
Sbjct: 1101 QGNQGLSPLVVAAHPQDPNQFA 1122
Score = 51.6 bits (122), Expect(2) = 7e-32
Identities = 26/50 (52%), Positives = 31/50 (62%)
Frame = -3
Query: 473 LALTDGSVKVIEPTESEGKWGSFPPMDNGKLNGRTASSSTTSNHTADQAQ 324
+ L DGSVK++EPTE EGKWG PP + S STTSN T +Q Q
Sbjct: 1123 VGLNDGSVKMMEPTEGEGKWGMIPPSE------AINSPSTTSNQTPEQLQ 1166
>gb|AAO42071.1| unknown protein [Arabidopsis thaliana] gi|28827708|gb|AAO50698.1|
unknown protein [Arabidopsis thaliana]
Length = 1108
Score = 108 bits (269), Expect(2) = 7e-32
Identities = 55/82 (67%), Positives = 62/82 (75%)
Frame = -1
Query: 721 IRQWVPQDVLSAPISCAAYSCDSQLIYATFCDANIGVFDADSLRLRCRIAPSVCLSSAAL 542
IRQW+PQD LSAPIS A Y+C+SQLIY TF D NIGVFDADSLRLRCRI+PS L
Sbjct: 986 IRQWIPQDSLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLP---- 1041
Query: 541 SGSHAVYPLVVAANPLAPNPFA 476
G+ + PLVVAA+P PN FA
Sbjct: 1042 QGNQGLSPLVVAAHPQDPNQFA 1063
Score = 51.6 bits (122), Expect(2) = 7e-32
Identities = 26/50 (52%), Positives = 31/50 (62%)
Frame = -3
Query: 473 LALTDGSVKVIEPTESEGKWGSFPPMDNGKLNGRTASSSTTSNHTADQAQ 324
+ L DGSVK++EPTE EGKWG PP + S STTSN T +Q Q
Sbjct: 1064 VGLNDGSVKMMEPTEGEGKWGMIPPSE------AINSPSTTSNQTPEQLQ 1107
>pir||T01778 hypothetical protein A_IG002P16.14 - Arabidopsis thaliana
gi|2191165|gb|AAB61051.1| Hypothetical protein F2P16.14
[Arabidopsis thaliana]
Length = 123
Score = 104 bits (260), Expect(2) = 8e-31
Identities = 53/80 (66%), Positives = 60/80 (74%)
Frame = -1
Query: 715 QWVPQDVLSAPISCAAYSCDSQLIYATFCDANIGVFDADSLRLRCRIAPSVCLSSAALSG 536
QW+PQD LSAPIS A Y+C+SQLIY TF D NIGVFDADSLRLRCRI+PS L G
Sbjct: 3 QWIPQDSLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLP----QG 58
Query: 535 SHAVYPLVVAANPLAPNPFA 476
+ + PLVVAA+P PN FA
Sbjct: 59 NQGLSPLVVAAHPQDPNQFA 78
Score = 51.6 bits (122), Expect(2) = 8e-31
Identities = 26/50 (52%), Positives = 31/50 (62%)
Frame = -3
Query: 473 LALTDGSVKVIEPTESEGKWGSFPPMDNGKLNGRTASSSTTSNHTADQAQ 324
+ L DGSVK++EPTE EGKWG PP + S STTSN T +Q Q
Sbjct: 79 VGLNDGSVKMMEPTEGEGKWGMIPPSE------AINSPSTTSNQTPEQLQ 122
>dbj|BAC57818.1| P0577B11.15 [Oryza sativa (japonica cultivar-group)]
Length = 1133
Score = 101 bits (251), Expect(2) = 1e-26
Identities = 50/82 (60%), Positives = 60/82 (72%)
Frame = -1
Query: 721 IRQWVPQDVLSAPISCAAYSCDSQLIYATFCDANIGVFDADSLRLRCRIAPSVCLSSAAL 542
+R W P++ L APIS A YSCD LIYA FCD IGVF+A+SLRLRCRIAPS + +
Sbjct: 1007 LRSWSPREALPAPISSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIAPSAYIPPSMS 1066
Query: 541 SGSHAVYPLVVAANPLAPNPFA 476
SG +VYP+VVAA+PL PN A
Sbjct: 1067 SGG-SVYPMVVAAHPLEPNQIA 1087
Score = 40.8 bits (94), Expect(2) = 1e-26
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -3
Query: 473 LALTDGSVKVIEPTESEGKWGSFPPMDNG 387
+ ++DG+V V+EP +S+ KWG PP DNG
Sbjct: 1088 VGMSDGAVHVVEPLDSDPKWGVAPPQDNG 1116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,929,250
Number of Sequences: 1393205
Number of extensions: 12786635
Number of successful extensions: 24000
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 23264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23982
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
