Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000311A_C01 KMC000311A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86322 calcium-dependent protein kinase 1 [imported] - Arab... 103 1e-21
gb|AAO42812.1| At1g18890 [Arabidopsis thaliana] 103 1e-21
gb|AAF79307.1|AC068602_30 F14D16.1 [Arabidopsis thaliana] 103 1e-21
pir||F96776 hypothetical protein F25A4.29 [imported] - Arabidops... 86 4e-16
ref|NP_177612.1| calcium-dependent protein kinase, putative; pro... 86 4e-16
>pir||H86322 calcium-dependent protein kinase 1 [imported] - Arabidopsis
thaliana gi|6730697|gb|AAF27092.1|AC011809_1
calcium-dependent protein kinase 1 [Arabidopsis
thaliana]
Length = 545
Score = 103 bits (257), Expect = 1e-21
Identities = 56/99 (56%), Positives = 67/99 (67%)
Frame = +3
Query: 255 MGNCSACGRADVVDGNTTTTTTTAATTTTKPTDPNRKKEPNHKKPNPRVDEPVRSAAPIR 434
MGNC+AC R D + + ++KP PNR + K NP + RS APIR
Sbjct: 1 MGNCNACVRPD----------SKESKPSSKPKKPNRDR-----KLNPFAGDFTRSPAPIR 45
Query: 435 VLRDVIPMSHRTRIRDKYILGRELGRGEFGITYLCTDRE 551
VL+DVIPMS++T+I DKYILGRELGRGEFGITYLCTDRE
Sbjct: 46 VLKDVIPMSNQTQISDKYILGRELGRGEFGITYLCTDRE 84
>gb|AAO42812.1| At1g18890 [Arabidopsis thaliana]
Length = 545
Score = 103 bits (257), Expect = 1e-21
Identities = 56/99 (56%), Positives = 67/99 (67%)
Frame = +3
Query: 255 MGNCSACGRADVVDGNTTTTTTTAATTTTKPTDPNRKKEPNHKKPNPRVDEPVRSAAPIR 434
MGNC+AC R D + + ++KP PNR + K NP + RS APIR
Sbjct: 1 MGNCNACVRPD----------SKESKPSSKPKKPNRDR-----KLNPFAGDFTRSPAPIR 45
Query: 435 VLRDVIPMSHRTRIRDKYILGRELGRGEFGITYLCTDRE 551
VL+DVIPMS++T+I DKYILGRELGRGEFGITYLCTDRE
Sbjct: 46 VLKDVIPMSNQTQISDKYILGRELGRGEFGITYLCTDRE 84
>gb|AAF79307.1|AC068602_30 F14D16.1 [Arabidopsis thaliana]
Length = 202
Score = 103 bits (257), Expect = 1e-21
Identities = 56/99 (56%), Positives = 67/99 (67%)
Frame = +3
Query: 255 MGNCSACGRADVVDGNTTTTTTTAATTTTKPTDPNRKKEPNHKKPNPRVDEPVRSAAPIR 434
MGNC+AC R D + + ++KP PNR + K NP + RS APIR
Sbjct: 1 MGNCNACVRPD----------SKESKPSSKPKKPNRDR-----KLNPFAGDFTRSPAPIR 45
Query: 435 VLRDVIPMSHRTRIRDKYILGRELGRGEFGITYLCTDRE 551
VL+DVIPMS++T+I DKYILGRELGRGEFGITYLCTDRE
Sbjct: 46 VLKDVIPMSNQTQISDKYILGRELGRGEFGITYLCTDRE 84
>pir||F96776 hypothetical protein F25A4.29 [imported] - Arabidopsis thaliana
gi|5882721|gb|AAD55274.1|AC008263_5 Strong similarity to
gb|D21805 calcium-dependent protein kinase (CDPK) from
Arabidopsis thaliana and contains a PF|00069 Eukaryotic
protein kinase and 4 PF|00036 EF hand domains
gi|22655135|gb|AAM98158.1| calcium-dependent protein
kinase, putative [Arabidopsis thaliana]
Length = 541
Score = 85.5 bits (210), Expect = 4e-16
Identities = 49/101 (48%), Positives = 61/101 (59%), Gaps = 2/101 (1%)
Frame = +3
Query: 255 MGNCSACGRADVVDGNTTTTTTTAATTTTKPTDPNRKKEPNHKKPNPRVDEP--VRSAAP 428
MGNC AC + D + PN+KK+P + D+P +R+ AP
Sbjct: 1 MGNCIACVKFDPDNSK-----------------PNQKKKPPRGRQRNPYDDPDGLRTHAP 43
Query: 429 IRVLRDVIPMSHRTRIRDKYILGRELGRGEFGITYLCTDRE 551
+RV IPMSH+++I DKYILGRELGRGEFGITYLCTDRE
Sbjct: 44 LRV----IPMSHQSQISDKYILGRELGRGEFGITYLCTDRE 80
>ref|NP_177612.1| calcium-dependent protein kinase, putative; protein id: At1g74740.1
[Arabidopsis thaliana]
Length = 567
Score = 85.5 bits (210), Expect = 4e-16
Identities = 49/101 (48%), Positives = 61/101 (59%), Gaps = 2/101 (1%)
Frame = +3
Query: 255 MGNCSACGRADVVDGNTTTTTTTAATTTTKPTDPNRKKEPNHKKPNPRVDEP--VRSAAP 428
MGNC AC + D + PN+KK+P + D+P +R+ AP
Sbjct: 1 MGNCIACVKFDPDNSK-----------------PNQKKKPPRGRQRNPYDDPDGLRTHAP 43
Query: 429 IRVLRDVIPMSHRTRIRDKYILGRELGRGEFGITYLCTDRE 551
+RV IPMSH+++I DKYILGRELGRGEFGITYLCTDRE
Sbjct: 44 LRV----IPMSHQSQISDKYILGRELGRGEFGITYLCTDRE 80
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,882,576
Number of Sequences: 1393205
Number of extensions: 16417155
Number of successful extensions: 375845
Number of sequences better than 10.0: 3041
Number of HSP's better than 10.0 without gapping: 109001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268259
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
