KMC000309A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC000309A_C01 KMC000309A_c01
CCGGATAAACACGAAATTTATTAATTAGCATCATCCAAAATACAGGGAAGGAACAAAAAT
CAAGCTTAAAAAAGGGCCCATAACTTTTCCACCCCGTGTACACTTCAAATTTAAGCACTA
AGCATGTTCATTGCACTCATCTAACATATCATTTATTGCAAAAACACATCACACTATGAT
CCCCAAACAACCAAAGAAAATGATAATATAAAATAAACACGCACACATAGATAACATGAA
ATCCCAATGCTCAAACATAGTGGTCCTCATATCATAATATCATAAGCACAATGCTTTCTC
ATATGTGTCGAACTGTAATGGGACTCCTAACTATGTGTCTTCCATTTGTCCATTGCAATT
TCCCAAATAGGTATTTTCTCCTTTGAGTCACACTCGTTGCCTGCACAATAACTTGGAATG
TCTTCTTTTCACCAATTTTCTTGAAACTCAAGGAATTTGGAACAACAACAATTTTATGTC
CTGGCAATTGTGCATTTGCAAAATACTTGCTTGGTGGCCCAACATTGGTGACTGTGCGAG
TAACATTTACCACATTTGACCTGATGTTTGGTAATGTGATTGAAGGGTAGTTCAAGTCTG
TTATGCTGTGAGATCCTGAACAAGTAAATGTCTTGTTGAAGTTTAGTGCTGAAATGAGTT
GTTGGTCATATCCAGAAGCACATAAGAAGTTCAAGTAATCAACAATGCTTAGATCATAAA
CAAGCCCAGGATCTATTGCACTGTTAGGTTGAACATGCCCTGAACCATAAGCAAATGGGG
TT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000309A_C01 KMC000309A_c01
(782 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM15440.1| subtilisin-like serine protease AIR3 [Arabidopsis... 164 2e-39
gb|AAK74005.1| At2g04160/T16B23.1 [Arabidopsis thaliana] gi|1632... 164 2e-39
ref|NP_565309.2| subtilisin-like serine protease AIR3; protein i... 164 2e-39
pir||T51335 subtilisin-like proteinase AIR3, auxin-induced [impo... 160 1e-38
gb|AAO61749.1|AF366558_1 subtilisin-like seed-specific protein [... 154 1e-36
>gb|AAM15440.1| subtilisin-like serine protease AIR3 [Arabidopsis thaliana]
Length = 578
Score = 164 bits (414), Expect = 2e-39
Identities = 84/160 (52%), Positives = 112/160 (69%), Gaps = 2/160 (1%)
Frame = -2
Query: 781 TPFAYGSGHVQPNSAIDPGLVYDLSIVDYLNFLCASGYDQQLISALNFNKTFTCSGSH-S 605
TPF++G+GHVQPN A++PGLVYDL I DYLNFLC+ GY+ IS + N FTCS S
Sbjct: 419 TPFSFGAGHVQPNLAVNPGLVYDLGIKDYLNFLCSLGYNASQISVFSGN-NFTCSSPKIS 477
Query: 604 ITDLNYPSITLPNIRSNVVNVTRTVTNVGPPSKYFANAQLP-GHKIVVVPNSLSFKKIGE 428
+ +LNYPSIT+PN+ S+ V V+RTV NVG PS Y P G + V P SL+F K+GE
Sbjct: 478 LVNLNYPSITVPNLTSSKVTVSRTVKNVGRPSMYTVKVNNPQGVYVAVKPTSLNFTKVGE 537
Query: 427 KKTFQVIVQATSVTQRRKYLFGKLQWTNGRHIVRSPITVR 308
+KTF+VI+ + + Y+FG+L W++ +H VRSPI V+
Sbjct: 538 QKTFKVILVKSKGNVAKGYVFGELVWSDKKHRVRSPIVVK 577
>gb|AAK74005.1| At2g04160/T16B23.1 [Arabidopsis thaliana]
gi|16323308|gb|AAL15409.1| At2g04160/T16B23.1
[Arabidopsis thaliana]
Length = 421
Score = 164 bits (414), Expect = 2e-39
Identities = 84/160 (52%), Positives = 112/160 (69%), Gaps = 2/160 (1%)
Frame = -2
Query: 781 TPFAYGSGHVQPNSAIDPGLVYDLSIVDYLNFLCASGYDQQLISALNFNKTFTCSGSH-S 605
TPF++G+GHVQPN A++PGLVYDL I DYLNFLC+ GY+ IS + N FTCS S
Sbjct: 262 TPFSFGAGHVQPNLAVNPGLVYDLGIKDYLNFLCSLGYNASQISVFSGN-NFTCSSPKIS 320
Query: 604 ITDLNYPSITLPNIRSNVVNVTRTVTNVGPPSKYFANAQLP-GHKIVVVPNSLSFKKIGE 428
+ +LNYPSIT+PN+ S+ V V+RTV NVG PS Y P G + V P SL+F K+GE
Sbjct: 321 LVNLNYPSITVPNLTSSKVTVSRTVKNVGRPSMYTVKVNNPQGVYVAVKPTSLNFTKVGE 380
Query: 427 KKTFQVIVQATSVTQRRKYLFGKLQWTNGRHIVRSPITVR 308
+KTF+VI+ + + Y+FG+L W++ +H VRSPI V+
Sbjct: 381 QKTFKVILVKSKGNVAKGYVFGELVWSDKKHRVRSPIVVK 420
>ref|NP_565309.2| subtilisin-like serine protease AIR3; protein id: At2g04160.1
[Arabidopsis thaliana] gi|4218991|gb|AAD12260.1|
subtilisin-like protease [Arabidopsis thaliana]
Length = 772
Score = 164 bits (414), Expect = 2e-39
Identities = 84/160 (52%), Positives = 112/160 (69%), Gaps = 2/160 (1%)
Frame = -2
Query: 781 TPFAYGSGHVQPNSAIDPGLVYDLSIVDYLNFLCASGYDQQLISALNFNKTFTCSGSH-S 605
TPF++G+GHVQPN A++PGLVYDL I DYLNFLC+ GY+ IS + N FTCS S
Sbjct: 613 TPFSFGAGHVQPNLAVNPGLVYDLGIKDYLNFLCSLGYNASQISVFSGN-NFTCSSPKIS 671
Query: 604 ITDLNYPSITLPNIRSNVVNVTRTVTNVGPPSKYFANAQLP-GHKIVVVPNSLSFKKIGE 428
+ +LNYPSIT+PN+ S+ V V+RTV NVG PS Y P G + V P SL+F K+GE
Sbjct: 672 LVNLNYPSITVPNLTSSKVTVSRTVKNVGRPSMYTVKVNNPQGVYVAVKPTSLNFTKVGE 731
Query: 427 KKTFQVIVQATSVTQRRKYLFGKLQWTNGRHIVRSPITVR 308
+KTF+VI+ + + Y+FG+L W++ +H VRSPI V+
Sbjct: 732 QKTFKVILVKSKGNVAKGYVFGELVWSDKKHRVRSPIVVK 771
>pir||T51335 subtilisin-like proteinase AIR3, auxin-induced [imported] -
Arabidopsis thaliana (fragment) gi|3695019|gb|AAC62611.1|
subtilisin-like protease [Arabidopsis thaliana]
Length = 758
Score = 160 bits (406), Expect = 1e-38
Identities = 83/160 (51%), Positives = 110/160 (67%), Gaps = 2/160 (1%)
Frame = -2
Query: 781 TPFAYGSGHVQPNSAIDPGLVYDLSIVDYLNFLCASGYDQQLISALNFNKTFTCSGSH-S 605
TPF++G+GHVQPN A++PGLVYDL I DYLNFLC+ GY+ IS + N FTCS S
Sbjct: 599 TPFSFGAGHVQPNLAVNPGLVYDLGIKDYLNFLCSLGYNASQISVFSGN-NFTCSSPKIS 657
Query: 604 ITDLNYPSITLPNIRSNVVNVTRTVTNVGPPSKYFANAQLP-GHKIVVVPNSLSFKKIGE 428
+ +LNYPSIT+PN+ S+ V V+RTV NVG PS Y P G + + P SL+F K+GE
Sbjct: 658 LVNLNYPSITVPNLTSSKVTVSRTVKNVGRPSMYTVKVNNPHGVYVALKPTSLNFTKVGE 717
Query: 427 KKTFQVIVQATSVTQRRKYLFGKLQWTNGRHIVRSPITVR 308
KTF+VI+ + + Y+FG+L W+ +H VRSPI V+
Sbjct: 718 LKTFKVILVKSKGNVAKGYMFGELVWSAKKHRVRSPIVVK 757
>gb|AAO61749.1|AF366558_1 subtilisin-like seed-specific protein [Arachis hypogaea]
Length = 244
Score = 154 bits (390), Expect = 1e-36
Identities = 77/160 (48%), Positives = 107/160 (66%), Gaps = 2/160 (1%)
Frame = -2
Query: 781 TPFAYGSGHVQPNSAIDPGLVYDLSIVDYLNFLCASGYDQQLISALNFNKTFTCSGSHSI 602
TPF+YG+GHV PNSA+DPGLVYD ++ DYLNFLCA GY + +S + C+ + SI
Sbjct: 84 TPFSYGAGHVDPNSAMDPGLVYDTTMDDYLNFLCALGYHETQLSMFTEGHHYKCATNFSI 143
Query: 601 TDLNYPSITLPNIRSNVVNVTRTVTNVGPPSKYFANAQLP-GHKIVVVPNSLSFKKIGEK 425
+LNYPSIT+P + + +TRT+ NVG P+ Y A Q P G + V PN L FK++GE+
Sbjct: 144 LNLNYPSITVPEFPGS-LTLTRTLKNVGAPATYIAQVQNPRGISVFVKPNILEFKEVGEE 202
Query: 424 KTFQVIVQATSVTQRRKYL-FGKLQWTNGRHIVRSPITVR 308
K+F+V ++ R + FGKL W++G H V+SPI V+
Sbjct: 203 KSFEVTLKGRQGEARNNHFKFGKLIWSDGNHYVKSPIVVK 242
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 677,327,685
Number of Sequences: 1393205
Number of extensions: 15236831
Number of successful extensions: 37971
Number of sequences better than 10.0: 165
Number of HSP's better than 10.0 without gapping: 36203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37661
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38935490438
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MPDL067d08_f |
AV779917 |
1 |
506 |
2 |
MPDL017c09_f |
AV777345 |
1 |
487 |
3 |
MFBL022b06_f |
BP042337 |
1 |
482 |
4 |
MFBL034b01_f |
BP042950 |
1 |
490 |
5 |
MF006a07_f |
BP028524 |
1 |
407 |
6 |
MRL012d09_f |
BP084314 |
1 |
358 |
7 |
GENLf074g05 |
BP066371 |
1 |
555 |
8 |
MFBL052b08_f |
BP043917 |
1 |
506 |
9 |
GENLf011d10 |
BP062929 |
2 |
490 |
10 |
GENLf013c06 |
BP063017 |
6 |
488 |
11 |
SPDL091f12_f |
BP057728 |
12 |
547 |
12 |
SPDL077c12_f |
BP056772 |
123 |
566 |
13 |
GENLf028c11 |
BP063827 |
134 |
607 |
14 |
GNf018f03 |
BP068687 |
136 |
477 |
15 |
GENLf045g01 |
BP064737 |
262 |
790 |
|
Lotus japonicus
Kazusa DNA Research Institute