Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000295A_C01 KMC000295A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180982.1| nodulin-like protein; protein id: At2g34350.1 [... 146 2e-34
gb|EAA07536.1| agCP1232 [Anopheles gambiae str. PEST] 59 7e-08
ref|XP_129351.1| expressed sequence AA536972 [Mus musculus] 50 2e-05
ref|NP_572906.2| CG2691-PA [Drosophila melanogaster] gi|22832211... 49 4e-05
gb|AAK93177.1| LD28893p [Drosophila melanogaster] 49 4e-05
>ref|NP_180982.1| nodulin-like protein; protein id: At2g34350.1 [Arabidopsis thaliana]
gi|7485467|pir||T02323 nodulin-like protein [imported] -
Arabidopsis thaliana gi|3337366|gb|AAC27411.1|
nodulin-like protein [Arabidopsis thaliana]
Length = 2301
Score = 146 bits (369), Expect = 2e-34
Identities = 74/124 (59%), Positives = 91/124 (72%)
Frame = -1
Query: 625 DPDYDARSERDTHLSAKSGTKGQKRRKTSDSGWAYTGKEYASKKASGDVKRKDKLEPYAY 446
D D DA+S + + S S K QKR KTS+SG+AYTGKEYASKKASGD+K+KDKLEPYAY
Sbjct: 2178 DADSDAKSSKGSRFSGNSSKKNQKRMKTSESGYAYTGKEYASKKASGDLKKKDKLEPYAY 2237
Query: 445 WPLDRKMMSRRPQHRSTARKGMASVVKMTKKLEGQSALWCAVPERA*N*KRLTRKVARER 266
WPLDRKMMSRRP+ R+ A +GM+SVVKM KK+EG+SA + KR +K + +
Sbjct: 2238 WPLDRKMMSRRPEQRAVAVRGMSSVVKMAKKMEGKSAAEALATTKFKKFKRSGQKKSAGK 2297
Query: 265 KKCK 254
KK K
Sbjct: 2298 KKNK 2301
>gb|EAA07536.1| agCP1232 [Anopheles gambiae str. PEST]
Length = 1392
Score = 58.5 bits (140), Expect = 7e-08
Identities = 34/82 (41%), Positives = 46/82 (55%)
Frame = -1
Query: 598 RDTHLSAKSGTKGQKRRKTSDSGWAYTGKEYASKKASGDVKRKDKLEPYAYWPLDRKMMS 419
R T S KSG + R + TG EY +KKASGD+ RK K EPYAY PL R ++
Sbjct: 1297 RPTAASVKSGYSSKSNRTAKSN--VSTGAEYRTKKASGDMLRKGKHEPYAYVPLSRNSLN 1354
Query: 418 RRPQHRSTARKGMASVVKMTKK 353
RR + ++ + S+VK +K
Sbjct: 1355 RRKRSKNAGQ--FKSIVKGARK 1374
>ref|XP_129351.1| expressed sequence AA536972 [Mus musculus]
Length = 411
Score = 50.1 bits (118), Expect = 2e-05
Identities = 22/38 (57%), Positives = 29/38 (75%)
Frame = -1
Query: 526 AYTGKEYASKKASGDVKRKDKLEPYAYWPLDRKMMSRR 413
A G EY +KKA GDVK+K +L+PYAY PL+R ++RR
Sbjct: 340 AAPGAEYKAKKAKGDVKKKGRLDPYAYVPLNRSKLNRR 377
>ref|NP_572906.2| CG2691-PA [Drosophila melanogaster] gi|22832211|gb|AAF48296.2|
CG2691-PA [Drosophila melanogaster]
Length = 1384
Score = 49.3 bits (116), Expect = 4e-05
Identities = 24/67 (35%), Positives = 36/67 (52%)
Frame = -1
Query: 589 HLSAKSGTKGQKRRKTSDSGWAYTGKEYASKKASGDVKRKDKLEPYAYWPLDRKMMSRRP 410
H +G K+ S G EY SKKA GD+K+ KL+PYAY PL R +++R
Sbjct: 1293 HRQLTAGNSDAMSVKSGKSTSRPAGSEYGSKKAKGDMKKSGKLDPYAYIPLTRNNLNKRK 1352
Query: 409 QHRSTAR 389
+ ++ +
Sbjct: 1353 RSMNSRK 1359
>gb|AAK93177.1| LD28893p [Drosophila melanogaster]
Length = 1014
Score = 49.3 bits (116), Expect = 4e-05
Identities = 24/67 (35%), Positives = 36/67 (52%)
Frame = -1
Query: 589 HLSAKSGTKGQKRRKTSDSGWAYTGKEYASKKASGDVKRKDKLEPYAYWPLDRKMMSRRP 410
H +G K+ S G EY SKKA GD+K+ KL+PYAY PL R +++R
Sbjct: 923 HRQLTAGNSDAMSVKSGKSTSRPAGSEYGSKKAKGDMKKSGKLDPYAYIPLTRNNLNKRK 982
Query: 409 QHRSTAR 389
+ ++ +
Sbjct: 983 RSMNSRK 989
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,528,914
Number of Sequences: 1393205
Number of extensions: 10999062
Number of successful extensions: 25584
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25571
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
