Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000289A_C01 KMC000289A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_343043.1| Glycosyltransferase [Sulfolobus solfataricus] g... 34 1.1
dbj|BAC42921.1| unknown protein [Arabidopsis thaliana] 33 1.9
gb|EAA22665.1| Caenorhabditis elegans C21ORF80, putative [Plasmo... 33 1.9
ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, ... 33 1.9
ref|NP_710721.1| conserved hypothetical protein [Leptospira inte... 33 3.2
>ref|NP_343043.1| Glycosyltransferase [Sulfolobus solfataricus]
gi|25394396|pir||B90322 glycosyltransferase [imported] -
Sulfolobus solfataricus gi|13814859|gb|AAK41833.1|
Glycosyltransferase [Sulfolobus solfataricus]
Length = 402
Score = 34.3 bits (77), Expect = 1.1
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = -2
Query: 513 TPLFNFDFKK-EDLYRFDKFFFSENDEVLLMTLTKQVLYNHSDITFKFND-RVHNYI--- 349
TP+ +D Y F FF + +V + T +YN I FND R+ +I
Sbjct: 323 TPVITYDLPSLTSTYNFKPVFFVKEFDVKGLVNTALEVYNMKKIEEMFNDERLEEFIKMH 382
Query: 348 HDWNNIENYVESLVS 304
W+N+ N V+ L++
Sbjct: 383 SSWDNVSNAVDKLIT 397
>dbj|BAC42921.1| unknown protein [Arabidopsis thaliana]
Length = 427
Score = 33.5 bits (75), Expect = 1.9
Identities = 29/87 (33%), Positives = 41/87 (46%), Gaps = 2/87 (2%)
Frame = -2
Query: 552 IWKMNEFGAHESWTPLFNFDFKKEDLYRFDKFFFS-ENDEVLLMTLTKQ-VLYNHSDITF 379
IW M+E+G +SW+ + + LYR K S +NDE +L+ L VLYN
Sbjct: 340 IWVMSEYGEAKSWSRI-----RINLLYRSMKPLCSTKNDEEVLLELDGDLVLYNFETNAS 394
Query: 378 KFNDRVHNYIHDWNNIENYVESLVSPS 298
+ D YVESL+SP+
Sbjct: 395 SNLGICGVKLSDGFEANTYVESLISPN 421
>gb|EAA22665.1| Caenorhabditis elegans C21ORF80, putative [Plasmodium yoelii
yoelii]
Length = 474
Score = 33.5 bits (75), Expect = 1.9
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Frame = -2
Query: 486 KEDLYRFDKFFFSENDEVLL--------MTLTKQVLYNHSDITFKFNDRVHNYIH 346
K D+Y DKF+F + + LL L K+VLY S + ++ N R YI+
Sbjct: 34 KNDVYLNDKFYFLKKKKYLLYDVNIGEGFNLQKEVLYRMSLVIYQLNKRDKEYIY 88
>ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, supported by cDNA:
108003. [Arabidopsis thaliana]
gi|6862928|gb|AAF30317.1|AC018907_17 hypothetical
protein [Arabidopsis thaliana]
gi|21536665|gb|AAM60997.1| unknown [Arabidopsis
thaliana]
Length = 416
Score = 33.5 bits (75), Expect = 1.9
Identities = 29/87 (33%), Positives = 41/87 (46%), Gaps = 2/87 (2%)
Frame = -2
Query: 552 IWKMNEFGAHESWTPLFNFDFKKEDLYRFDKFFFS-ENDEVLLMTLTKQ-VLYNHSDITF 379
IW M+E+G +SW+ + + LYR K S +NDE +L+ L VLYN
Sbjct: 329 IWVMSEYGEAKSWSRI-----RINLLYRSMKPLCSTKNDEEVLLELDGDLVLYNFETNAS 383
Query: 378 KFNDRVHNYIHDWNNIENYVESLVSPS 298
+ D YVESL+SP+
Sbjct: 384 SNLGICGVKLSDGFEANTYVESLISPN 410
>ref|NP_710721.1| conserved hypothetical protein [Leptospira interrogans serovar lai
str. 56601] gi|24193967|gb|AAN47739.1|AE011240_4
conserved hypothetical protein [Leptospira interrogans
serovar lai str. 56601]
Length = 143
Score = 32.7 bits (73), Expect = 3.2
Identities = 15/47 (31%), Positives = 30/47 (62%)
Frame = -2
Query: 477 LYRFDKFFFSENDEVLLMTLTKQVLYNHSDITFKFNDRVHNYIHDWN 337
+Y + ++F END +L++ L K+VL+ + DI + + + ++ DWN
Sbjct: 42 VYPENFYYFPENDSILVLHLDKKVLWIY-DILCRDSFSISKFLLDWN 87
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,603,810
Number of Sequences: 1393205
Number of extensions: 9118110
Number of successful extensions: 27442
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 25340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27432
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
