Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000268A_C01 KMC000268A_c01
(453 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568540.1| putative protein; protein id: At5g36740.1 [Arab... 37 0.092
dbj|BAB08573.1| gb|AAC80581.1~gene_id:MPK17.2~strong similarity ... 37 0.092
gb|EAA19634.1| Endonuclease/Exonuclease/phosphatase family, puta... 33 1.7
emb|CAD71098.1| hypothetical protein [Neurospora crassa] 32 2.3
gb|EAA28173.1| predicted protein [Neurospora crassa] 32 2.3
>ref|NP_568540.1| putative protein; protein id: At5g36740.1 [Arabidopsis thaliana]
Length = 1179
Score = 37.0 bits (84), Expect = 0.092
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = -3
Query: 451 PSVPENVEMWTQKFIFNLVNEVSREIKKEISSHNILTFPRTMIMYKDLCVRTSDVIQGAD 272
P+VPE ++ WT F F VN+ KK I + N+L FP ++ K L V +
Sbjct: 915 PAVPELIDTWTSGFGFAPVNDSE---KKTIKNLNLLVFPGVDMLGKSL------VKEKIT 965
Query: 271 DQVESQNDEEPLLA----LQTEVHEPQREQAERSHLDLN 167
D V S + LLA L +V E + E+++ S + N
Sbjct: 966 DSVVSSPNGLVLLAPEMTLPVDVEENKPEESKDSAHERN 1004
>dbj|BAB08573.1| gb|AAC80581.1~gene_id:MPK17.2~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 1188
Score = 37.0 bits (84), Expect = 0.092
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = -3
Query: 451 PSVPENVEMWTQKFIFNLVNEVSREIKKEISSHNILTFPRTMIMYKDLCVRTSDVIQGAD 272
P+VPE ++ WT F F VN+ KK I + N+L FP ++ K L V +
Sbjct: 905 PAVPELIDTWTSGFGFAPVNDSE---KKTIKNLNLLVFPGVDMLGKSL------VKEKIT 955
Query: 271 DQVESQNDEEPLLA----LQTEVHEPQREQAERSHLDLN 167
D V S + LLA L +V E + E+++ S + N
Sbjct: 956 DSVVSSPNGLVLLAPEMTLPVDVEENKPEESKDSAHERN 994
>gb|EAA19634.1| Endonuclease/Exonuclease/phosphatase family, putative [Plasmodium
yoelii yoelii]
Length = 827
Score = 32.7 bits (73), Expect = 1.7
Identities = 27/98 (27%), Positives = 45/98 (45%)
Frame = +1
Query: 79 KNIQDKMLKIV*SFHHNFGYFLNSPAEVPHSNQDVISQPAPFVVHGLQFEVLVVVPRHSE 258
KN++ K K++ NFG+F+N E+P F +L + ++
Sbjct: 66 KNVKKKKKKLLFLLSKNFGHFVNRQQEIP-------------------FHILKLNNNNTN 106
Query: 259 IQLDRLRLG*HLMFSHTNLCT*S*FEGTSRCCERIFLS 372
I+ +RL L H FS LC+ + + G +R IFL+
Sbjct: 107 IKRNRLFLFDH-NFSKLKLCSQN-YPGATRSFNSIFLN 142
>emb|CAD71098.1| hypothetical protein [Neurospora crassa]
Length = 222
Score = 32.3 bits (72), Expect = 2.3
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = -3
Query: 364 ISSHNILTFPRTMIMYKDLCV-RTSDVI----QGADDQVESQNDEEPLLALQTEVHEPQR 200
I S N PR+ I++ DL DVI +G ++Q+E + E+ L Q + Q+
Sbjct: 84 IYSGNAAECPRSFIIHLDLTGDNAGDVINRQEEGEEEQIEEKGQEDRLDRQQHHHQQQQQ 143
Query: 199 EQAERSHLDLNVE 161
+Q ++ + NVE
Sbjct: 144 QQQQQQPIPYNVE 156
>gb|EAA28173.1| predicted protein [Neurospora crassa]
Length = 196
Score = 32.3 bits (72), Expect = 2.3
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = -3
Query: 364 ISSHNILTFPRTMIMYKDLCV-RTSDVI----QGADDQVESQNDEEPLLALQTEVHEPQR 200
I S N PR+ I++ DL DVI +G ++Q+E + E+ L Q + Q+
Sbjct: 84 IYSGNAAECPRSFIIHLDLTGDNAGDVINRQEEGEEEQIEEKGQEDRLDRQQHHHQQQQQ 143
Query: 199 EQAERSHLDLNVE 161
+Q ++ + NVE
Sbjct: 144 QQQQQQPIPYNVE 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,856,249
Number of Sequences: 1393205
Number of extensions: 6532241
Number of successful extensions: 18120
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 17602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18103
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
