Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000264A_C01 KMC000264A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A96602 elongation factor EF-2 [imported] - Arabidopsis thal... 171 5e-50
ref|NP_564707.2| elongation factor, putative; protein id: At1g56... 171 5e-50
gb|AAN31925.1| putative elongation factor [Arabidopsis thaliana] 171 5e-50
gb|AAK59516.1| putative elongation factor [Arabidopsis thaliana]... 171 5e-50
dbj|BAA77028.1| elongation factor 2 [Lithospermum erythrorhizon] 161 1e-47
>pir||A96602 elongation factor EF-2 [imported] - Arabidopsis thaliana
gi|6056373|gb|AAF02837.1|AC009894_8 elongation factor
EF-2 [Arabidopsis thaliana]
Length = 846
Score = 171 bits (434), Expect(2) = 5e-50
Identities = 82/91 (90%), Positives = 86/91 (94%)
Frame = -2
Query: 595 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRQGTPLYNIKAYLPVVESFGFSGTLR 416
EPVY+VEIQAPE ALGGIYSVLNQKRGHVFEEMQR GTPLYNIKAYLPVVESFGFS LR
Sbjct: 730 EPVYMVEIQAPEGALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSQLR 789
Query: 415 AATSGQAFPQCVFDHWDMMSSDPLESGSQAA 323
AATSGQAFPQCVFDHW+MMSSDPLE G+QA+
Sbjct: 790 AATSGQAFPQCVFDHWEMMSSDPLEPGTQAS 820
Score = 48.1 bits (113), Expect(2) = 5e-50
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = -3
Query: 318 LVTDIRKRKGLKEQMTPLSEFEDKL 244
LV DIRKRKGLKE MTPLSEFEDKL
Sbjct: 822 LVADIRKRKGLKEAMTPLSEFEDKL 846
>ref|NP_564707.2| elongation factor, putative; protein id: At1g56075.1, supported by
cDNA: gi_13605864, supported by cDNA: gi_15450762
[Arabidopsis thaliana]
gi|13605865|gb|AAK32918.1|AF367331_1 At1g56070/T6H22_13
[Arabidopsis thaliana] gi|15450763|gb|AAK96653.1|
elongation factor EF-2 [Arabidopsis thaliana]
gi|23397045|gb|AAN31808.1| putative elongation factor
[Arabidopsis thaliana] gi|23397162|gb|AAN31864.1|
putative elongation factor [Arabidopsis thaliana]
gi|27363422|gb|AAO11630.1| At1g56070/T6H22_13
[Arabidopsis thaliana]
Length = 843
Score = 171 bits (434), Expect(2) = 5e-50
Identities = 82/91 (90%), Positives = 86/91 (94%)
Frame = -2
Query: 595 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRQGTPLYNIKAYLPVVESFGFSGTLR 416
EPVY+VEIQAPE ALGGIYSVLNQKRGHVFEEMQR GTPLYNIKAYLPVVESFGFS LR
Sbjct: 727 EPVYMVEIQAPEGALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSQLR 786
Query: 415 AATSGQAFPQCVFDHWDMMSSDPLESGSQAA 323
AATSGQAFPQCVFDHW+MMSSDPLE G+QA+
Sbjct: 787 AATSGQAFPQCVFDHWEMMSSDPLEPGTQAS 817
Score = 48.1 bits (113), Expect(2) = 5e-50
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = -3
Query: 318 LVTDIRKRKGLKEQMTPLSEFEDKL 244
LV DIRKRKGLKE MTPLSEFEDKL
Sbjct: 819 LVADIRKRKGLKEAMTPLSEFEDKL 843
>gb|AAN31925.1| putative elongation factor [Arabidopsis thaliana]
Length = 665
Score = 171 bits (434), Expect(2) = 5e-50
Identities = 82/91 (90%), Positives = 86/91 (94%)
Frame = -2
Query: 595 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRQGTPLYNIKAYLPVVESFGFSGTLR 416
EPVY+VEIQAPE ALGGIYSVLNQKRGHVFEEMQR GTPLYNIKAYLPVVESFGFS LR
Sbjct: 549 EPVYMVEIQAPEGALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSQLR 608
Query: 415 AATSGQAFPQCVFDHWDMMSSDPLESGSQAA 323
AATSGQAFPQCVFDHW+MMSSDPLE G+QA+
Sbjct: 609 AATSGQAFPQCVFDHWEMMSSDPLEPGTQAS 639
Score = 48.1 bits (113), Expect(2) = 5e-50
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = -3
Query: 318 LVTDIRKRKGLKEQMTPLSEFEDKL 244
LV DIRKRKGLKE MTPLSEFEDKL
Sbjct: 641 LVADIRKRKGLKEAMTPLSEFEDKL 665
>gb|AAK59516.1| putative elongation factor [Arabidopsis thaliana]
gi|17104671|gb|AAL34224.1| putative elongation factor
[Arabidopsis thaliana]
Length = 655
Score = 171 bits (434), Expect(2) = 5e-50
Identities = 82/91 (90%), Positives = 86/91 (94%)
Frame = -2
Query: 595 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRQGTPLYNIKAYLPVVESFGFSGTLR 416
EPVY+VEIQAPE ALGGIYSVLNQKRGHVFEEMQR GTPLYNIKAYLPVVESFGFS LR
Sbjct: 539 EPVYMVEIQAPEGALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSQLR 598
Query: 415 AATSGQAFPQCVFDHWDMMSSDPLESGSQAA 323
AATSGQAFPQCVFDHW+MMSSDPLE G+QA+
Sbjct: 599 AATSGQAFPQCVFDHWEMMSSDPLEPGTQAS 629
Score = 48.1 bits (113), Expect(2) = 5e-50
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = -3
Query: 318 LVTDIRKRKGLKEQMTPLSEFEDKL 244
LV DIRKRKGLKE MTPLSEFEDKL
Sbjct: 631 LVADIRKRKGLKEAMTPLSEFEDKL 655
>dbj|BAA77028.1| elongation factor 2 [Lithospermum erythrorhizon]
Length = 222
Score = 161 bits (407), Expect(2) = 1e-47
Identities = 79/93 (84%), Positives = 84/93 (89%), Gaps = 1/93 (1%)
Frame = -2
Query: 595 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRQGTPLYN-IKAYLPVVESFGFSGTL 419
EPVY+VEIQAPEQALGGIYSVLNQKRGHVFEEMQR GTPLYN +KAYLPV+ESFGFS L
Sbjct: 105 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNKLKAYLPVIESFGFSSQL 164
Query: 418 RAATSGQAFPQCVFDHWDMMSSDPLESGSQAAT 320
RAATSGQAFPQ VFDHWDMM SDPL+ +QA T
Sbjct: 165 RAATSGQAFPQSVFDHWDMMPSDPLDPTTQART 197
Score = 50.4 bits (119), Expect(2) = 1e-47
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -3
Query: 318 LVTDIRKRKGLKEQMTPLSEFEDKL 244
LV DIRKRKGLKEQMTPLSEFEDKL
Sbjct: 198 LVADIRKRKGLKEQMTPLSEFEDKL 222
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,113,438
Number of Sequences: 1393205
Number of extensions: 10711161
Number of successful extensions: 27930
Number of sequences better than 10.0: 463
Number of HSP's better than 10.0 without gapping: 26819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27740
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
