Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000257A_C01 KMC000257A_c01
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_502043.1| 7 transmembrane chemoreceptor family member fam... 35 1.1
ref|NP_508995.1| Putative nuclear protein, with 2 coiled coil-4 ... 33 4.3
ref|XP_028218.5| hypothetical protein XP_028218 [Homo sapiens] 32 7.3
pir||T46387 hypothetical protein DKFZp434A1520.1 - human (fragme... 32 7.3
>ref|NP_502043.1| 7 transmembrane chemoreceptor family member family member
[Caenorhabditis elegans] gi|7510398|pir||T27315
hypothetical protein Y69E1A.6 - Caenorhabditis elegans
gi|3947642|emb|CAA22263.1| Hypothetical protein Y69E1A.6
[Caenorhabditis elegans]
Length = 347
Score = 34.7 bits (78), Expect = 1.1
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Frame = -2
Query: 640 EVLSVSGAAMWVVRVIVPMIPIWALLVLWLR----PKKMENLLRDVKVFKANLASLTFSV 473
++ S A V +V +IPI ++ L++ +++ N++ V F A+L++ +
Sbjct: 242 QIAVTSLMAQATVPFLVLIIPIGTIVYLFVHVLPNAQEISNIMMAVYSFHASLSTFVMII 301
Query: 472 TTPSKTTCSRCAFRSNCPQICPPLLKIVAPSS 377
+TP R FR+ P I + K+ PS+
Sbjct: 302 STPQYRKMIRRGFRAQHPIISTQMTKVGPPSA 333
>ref|NP_508995.1| Putative nuclear protein, with 2 coiled coil-4 domains, nematode
specific (93.0 kD) [Caenorhabditis elegans]
gi|7506439|pir||T16697 hypothetical protein R07E4.5 -
Caenorhabditis elegans gi|1049395|gb|AAA80404.1|
Hypothetical protein R07E4.5 [Caenorhabditis elegans]
Length = 817
Score = 32.7 bits (73), Expect = 4.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 518 ISQKVFHLLWPQPQHQQGPYWNHRDYHSHHP 610
+S + H P P HQQ P+ +H+HHP
Sbjct: 758 VSSRRHHYTQPHPHHQQMPHHQPHLHHAHHP 788
>ref|XP_028218.5| hypothetical protein XP_028218 [Homo sapiens]
Length = 389
Score = 32.0 bits (71), Expect = 7.3
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 416 NMSSFTQDCCSFFVSF--TVTVPAKNLLLVLPLVVADW 309
N SS TQ+CC+F+ V + + LL VLPL +W
Sbjct: 98 NQSSQTQECCTFYCQSCGEVIIKDRKLLRVLPLPSENW 135
>pir||T46387 hypothetical protein DKFZp434A1520.1 - human (fragment)
gi|6808225|emb|CAB70802.1| hypothetical protein [Homo
sapiens]
Length = 182
Score = 32.0 bits (71), Expect = 7.3
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 416 NMSSFTQDCCSFFVSF--TVTVPAKNLLLVLPLVVADW 309
N SS TQ+CC+F+ V + + LL VLPL +W
Sbjct: 54 NQSSQTQECCTFYCQSCGEVIIKDRKLLRVLPLPSENW 91
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,710,083
Number of Sequences: 1393205
Number of extensions: 11923626
Number of successful extensions: 34081
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33909
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
