Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000255A_C01 KMC000255A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200072.1| putative protein; protein id: At5g52590.1 [Arab... 248 3e-65
gb|EAA31505.1| probable GTPase activating protein [MIPS] [Neuros... 104 1e-21
gb|EAA12884.1| agCP10893 [Anopheles gambiae str. PEST] 104 1e-21
emb|CAC18154.2| probable GTPase activating protein [Neurospora c... 104 1e-21
ref|NP_079982.1| RIKEN cDNA 4432405K22 [Mus musculus] gi|1285235... 103 2e-21
>ref|NP_200072.1| putative protein; protein id: At5g52590.1 [Arabidopsis thaliana]
gi|8953714|dbj|BAA98077.1| contains similarity to GTPase
activating protein~gene_id:F6N7.7 [Arabidopsis thaliana]
gi|26450726|dbj|BAC42472.1| unknown protein [Arabidopsis
thaliana]
Length = 338
Score = 248 bits (634), Expect = 3e-65
Identities = 113/135 (83%), Positives = 125/135 (91%)
Frame = -3
Query: 619 LDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEVLWTHYPSEHLHLYVCVA 440
LDSPLHNYFK+ DCLNYFFCFRW+LIQFKREFEYE TM+LWEV+WTHY SEH HLYVCVA
Sbjct: 202 LDSPLHNYFKENDCLNYFFCFRWILIQFKREFEYEKTMQLWEVMWTHYLSEHFHLYVCVA 261
Query: 439 VLKRYRNKIIGEEMDFDTLLKFINELSGHIDLDATLRDAEALSICAGENGAARIPPGTPP 260
VLKR R+KI+GE+MDFDTLLKFINELSGHIDLD+T+RDAEAL I AGENGAA IPPGTPP
Sbjct: 262 VLKRCRSKIMGEQMDFDTLLKFINELSGHIDLDSTVRDAEALCIEAGENGAASIPPGTPP 321
Query: 259 SLPVDDGSFYVQQDD 215
SLP+DDG+ Y Q+DD
Sbjct: 322 SLPLDDGTLYPQEDD 336
>gb|EAA31505.1| probable GTPase activating protein [MIPS] [Neurospora crassa]
Length = 884
Score = 104 bits (259), Expect = 1e-21
Identities = 48/102 (47%), Positives = 71/102 (69%)
Frame = -3
Query: 619 LDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEVLWTHYPSEHLHLYVCVA 440
+D L+ + + D N+FF FR +L+ +KREFE+ D +RLWE LWT Y S HL++ +A
Sbjct: 660 MDPKLYAHLESADSTNFFFFFRMLLVWYKREFEWADVLRLWEALWTDYLSSGFHLFIALA 719
Query: 439 VLKRYRNKIIGEEMDFDTLLKFINELSGHIDLDATLRDAEAL 314
+L+R+R+ I+ FD +LK++NELS IDL++TL AEAL
Sbjct: 720 ILERHRDVIMTHLKHFDEVLKYVNELSTTIDLESTLIRAEAL 761
>gb|EAA12884.1| agCP10893 [Anopheles gambiae str. PEST]
Length = 717
Score = 104 bits (259), Expect = 1e-21
Identities = 46/98 (46%), Positives = 64/98 (64%)
Frame = -3
Query: 607 LHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEVLWTHYPSEHLHLYVCVAVLKR 428
L NY ++ N +FCFRW+L+ FKREF D M LWEVLWT P + HL+VCVA+L +
Sbjct: 539 LFNYMRENQSENMYFCFRWLLVWFKREFSNSDIMHLWEVLWTGLPCPNFHLFVCVAILDQ 598
Query: 427 YRNKIIGEEMDFDTLLKFINELSGHIDLDATLRDAEAL 314
+ I + F +LK +NELSG+++L A L AE++
Sbjct: 599 EMDVFIDGQFSFTEILKHVNELSGNLNLAAVLEQAESI 636
>emb|CAC18154.2| probable GTPase activating protein [Neurospora crassa]
Length = 877
Score = 104 bits (259), Expect = 1e-21
Identities = 48/102 (47%), Positives = 71/102 (69%)
Frame = -3
Query: 619 LDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEVLWTHYPSEHLHLYVCVA 440
+D L+ + + D N+FF FR +L+ +KREFE+ D +RLWE LWT Y S HL++ +A
Sbjct: 653 MDPKLYAHLESADSTNFFFFFRMLLVWYKREFEWADVLRLWEALWTDYLSSGFHLFIALA 712
Query: 439 VLKRYRNKIIGEEMDFDTLLKFINELSGHIDLDATLRDAEAL 314
+L+R+R+ I+ FD +LK++NELS IDL++TL AEAL
Sbjct: 713 ILERHRDVIMTHLKHFDEVLKYVNELSTTIDLESTLIRAEAL 754
>ref|NP_079982.1| RIKEN cDNA 4432405K22 [Mus musculus] gi|12852358|dbj|BAB29380.1|
unnamed protein product [Mus musculus]
gi|26347573|dbj|BAC37435.1| unnamed protein product [Mus
musculus]
Length = 671
Score = 103 bits (257), Expect = 2e-21
Identities = 47/104 (45%), Positives = 71/104 (68%)
Frame = -3
Query: 619 LDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEVLWTHYPSEHLHLYVCVA 440
LDS +Y + +D +FCFRW+LI+FKREF + D +RLWEV+WT P ++ HL +C A
Sbjct: 492 LDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCA 551
Query: 439 VLKRYRNKIIGEEMDFDTLLKFINELSGHIDLDATLRDAEALSI 308
+L+ + +I+ + F+ +LK INELS ID++ L AEA+S+
Sbjct: 552 ILESEKQQIMAKHYGFNEILKHINELSMKIDVEDILCKAEAISL 595
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,005,549
Number of Sequences: 1393205
Number of extensions: 11219999
Number of successful extensions: 27412
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 26376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27361
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
