Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000254A_C01 KMC000254A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197706.1| PWWP domain protein; protein id: At5g23150.1, s... 76 4e-13
ref|NP_196440.1| PWWP domain protein; protein id: At5g08230.1 [A... 47 3e-04
pir||T04530 hypothetical protein F16A16.200 - Arabidopsis thalia... 33 2.3
ref|NP_194598.1| hypothetical protein; protein id: At4g28690.1 [... 33 2.3
gb|EAA38820.1| GLP_561_28478_7902 [Giardia lamblia ATCC 50803] 33 3.1
>ref|NP_197706.1| PWWP domain protein; protein id: At5g23150.1, supported by cDNA:
gi_4868119 [Arabidopsis thaliana] gi|25456231|pir||T51947
probable transcription factor HUA2 [imported] -
Arabidopsis thaliana gi|4868120|gb|AAD31171.1| putative
transcription factor [Arabidopsis thaliana]
Length = 1392
Score = 75.9 bits (185), Expect = 4e-13
Identities = 39/68 (57%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = -3
Query: 622 GRNPSCPGPPFVQEGNFRPLLERPPVSNVGFQRPISGNLPSAP-ISGHGVPQMLPCRPDI 446
GRN S PG P V + FRP ERPP + +Q + NL + P I GH PQMLP RPDI
Sbjct: 1325 GRN-SHPGLPRVTDSFFRPPPERPPSGTMNYQPSAASNLQAVPAIPGHTAPQMLPSRPDI 1383
Query: 445 PTVNCWRP 422
PTVNCWRP
Sbjct: 1384 PTVNCWRP 1391
>ref|NP_196440.1| PWWP domain protein; protein id: At5g08230.1 [Arabidopsis thaliana]
gi|11358189|pir||T50508 hypothetical protein T22D6.170 -
Arabidopsis thaliana gi|8346560|emb|CAB93724.1| putative
protein [Arabidopsis thaliana]
Length = 1445
Score = 46.6 bits (109), Expect = 3e-04
Identities = 27/67 (40%), Positives = 37/67 (54%)
Frame = -3
Query: 619 RNPSCPGPPFVQEGNFRPLLERPPVSNVGFQRPISGNLPSAPISGHGVPQMLPCRPDIPT 440
RNP PG V +G F+P ERPP V +Q + + ISG+ QML RPD+P+
Sbjct: 1380 RNPF-PGSRTVTDGVFQPPPERPPSGTVRYQLAANNLQGGSTISGNIASQMLLSRPDVPS 1438
Query: 439 VNCWRPT 419
+RP+
Sbjct: 1439 AAQYRPS 1445
>pir||T04530 hypothetical protein F16A16.200 - Arabidopsis thaliana (fragment)
gi|25372734|pir||D85334 hypothetical protein AT4g28690
[imported] - Arabidopsis thaliana
gi|4218129|emb|CAA22983.1| hypothetical protein
[Arabidopsis thaliana] gi|7269724|emb|CAB81457.1|
hypothetical protein [Arabidopsis thaliana]
Length = 419
Score = 33.5 bits (75), Expect = 2.3
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -3
Query: 622 GRNPSCPGPPFVQEGNFRPLLERPPVSNVG-FQRPISGNLPSAPIS 488
G P+C PP +G+ +P PPV++ G QR ++G++ + P+S
Sbjct: 293 GSQPTCCAPPVASQGS-QPTRYAPPVASQGNAQRIVTGSISTVPVS 337
>ref|NP_194598.1| hypothetical protein; protein id: At4g28690.1 [Arabidopsis
thaliana]
Length = 448
Score = 33.5 bits (75), Expect = 2.3
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -3
Query: 622 GRNPSCPGPPFVQEGNFRPLLERPPVSNVG-FQRPISGNLPSAPIS 488
G P+C PP +G+ +P PPV++ G QR ++G++ + P+S
Sbjct: 322 GSQPTCCAPPVASQGS-QPTRYAPPVASQGNAQRIVTGSISTVPVS 366
>gb|EAA38820.1| GLP_561_28478_7902 [Giardia lamblia ATCC 50803]
Length = 6858
Score = 33.1 bits (74), Expect = 3.1
Identities = 23/79 (29%), Positives = 38/79 (47%), Gaps = 11/79 (13%)
Frame = +3
Query: 207 VRNMGLNLEANVPWIHCQENYNIHNPAKSLHNSQKI--SFQVSCMCFTGESN-------- 356
++N G+ + ++ P HC NY I N L +S+ I S VSC FT S
Sbjct: 4651 MQNNGVYIGSSPPSFHCVRNYQIINVGPPLLSSKCIAHSLTVSCSAFTNVSAVISAVFTA 4710
Query: 357 -TEAPYITLHVDPPATTLL 410
+ A +I +++P ++L
Sbjct: 4711 WSNASHIRSYINPVVFSIL 4729
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,094,888
Number of Sequences: 1393205
Number of extensions: 12299447
Number of successful extensions: 28104
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 26927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28077
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
