Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000253A_C01 KMC000253A_c01
(685 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175481.1| unknown protein; protein id: At1g50660.1 [Arabi... 55 7e-07
dbj|BAB02816.1| gb|AAF00675.1~gene_id:MQC12.10~similar to unknow... 55 1e-06
ref|NP_188670.1| unknown protein; protein id: At3g20350.1 [Arabi... 55 1e-06
>ref|NP_175481.1| unknown protein; protein id: At1g50660.1 [Arabidopsis thaliana]
gi|25405391|pir||C96543 unknown protein [imported] -
Arabidopsis thaliana gi|9454546|gb|AAF87869.1|AC012561_2
Unknown protein [Arabidopsis thaliana]
gi|12322324|gb|AAG51180.1|AC079279_1 unknown protein
[Arabidopsis thaliana]
Length = 725
Score = 55.5 bits (132), Expect = 7e-07
Identities = 27/46 (58%), Positives = 38/46 (81%), Gaps = 2/46 (4%)
Frame = -3
Query: 680 NLHNRAQKGCI--PRTAQKNSLKARLLEARMETQKFQLRHVLKQKI 549
+++ KGCI PR AQK+SLK++L+EAR+E+QK QL+HVLKQ+I
Sbjct: 680 HVNRGGMKGCIEWPRGAQKSSLKSKLIEARIESQKVQLKHVLKQRI 725
>dbj|BAB02816.1| gb|AAF00675.1~gene_id:MQC12.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 495
Score = 54.7 bits (130), Expect = 1e-06
Identities = 27/46 (58%), Positives = 36/46 (77%), Gaps = 2/46 (4%)
Frame = -3
Query: 680 NLHNRAQKGCI--PRTAQKNSLKARLLEARMETQKFQLRHVLKQKI 549
NL+ +KGCI PR A KNSLK +L+EA++E+QK QL+HVL+ KI
Sbjct: 450 NLNRGGRKGCIEWPRGAHKNSLKTKLIEAQIESQKVQLKHVLEHKI 495
>ref|NP_188670.1| unknown protein; protein id: At3g20350.1 [Arabidopsis thaliana]
Length = 673
Score = 54.7 bits (130), Expect = 1e-06
Identities = 27/46 (58%), Positives = 36/46 (77%), Gaps = 2/46 (4%)
Frame = -3
Query: 680 NLHNRAQKGCI--PRTAQKNSLKARLLEARMETQKFQLRHVLKQKI 549
NL+ +KGCI PR A KNSLK +L+EA++E+QK QL+HVL+ KI
Sbjct: 628 NLNRGGRKGCIEWPRGAHKNSLKTKLIEAQIESQKVQLKHVLEHKI 673
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,322,134
Number of Sequences: 1393205
Number of extensions: 11982979
Number of successful extensions: 23054
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23046
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
