Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000252A_C01 KMC000252A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_736709.1| putative AMP nucleosidase [Corynebacterium effi... 34 1.0
pir||S05006 calcium channel alpha-1 chain, dihydropyridine sensi... 33 2.9
dbj|BAC07248.1| growth hormone [Cottus kazika] 32 3.8
gb|AAM65387.1| unknown [Arabidopsis thaliana] 32 6.5
ref|NP_200758.1| putative protein; protein id: At5g59500.1, supp... 32 6.5
>ref|NP_736709.1| putative AMP nucleosidase [Corynebacterium efficiens YS-314]
gi|23491934|dbj|BAC16909.1| putative AMP nucleosidase
[Corynebacterium efficiens YS-314]
Length = 489
Score = 34.3 bits (77), Expect = 1.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 174 WQVPRKMWVYIGGDTSVVIELERSLVRNDNL*LRVDF 64
W PRK+W + G T+V I++E S + + R+ +
Sbjct: 388 WHTPRKLWEWFNGSTAVAIDMESSTLATNGYRYRIPY 424
>pir||S05006 calcium channel alpha-1 chain, dihydropyridine sensitive, brain -
rat (fragment)
Length = 295
Score = 32.7 bits (73), Expect = 2.9
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +2
Query: 215 AFAMQNFYHFFISITGKKGGEGEWK----PRNKKKTV*KAILFSPLLTKIPKSP 364
AF M N + F+ +T ++ GE E+K +N+++ V A+ PL IPK+P
Sbjct: 102 AFFMMNIFVGFVIVTFQEQGEKEYKNSELDKNQRQCVEYALKARPLRRYIPKNP 155
>dbj|BAC07248.1| growth hormone [Cottus kazika]
Length = 203
Score = 32.3 bits (72), Expect = 3.8
Identities = 17/59 (28%), Positives = 31/59 (51%), Gaps = 1/59 (1%)
Frame = +3
Query: 27 RTLI*IMLICYGGNPPSVTDCH-F*LRTARVQSLHLYPHQCTPTFSLALAREKNRKIKK 200
R ++ ++++C G + +TD F + RVQ LHL + F +L E+ R++ K
Sbjct: 3 RVVLLLLVVCLGVSSQPITDGRLFSIAVGRVQHLHLLAQRLFSDFESSLQTEEQRQLNK 61
>gb|AAM65387.1| unknown [Arabidopsis thaliana]
Length = 396
Score = 31.6 bits (70), Expect = 6.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 535 WIHFSWIWVFFPLVLKPKVIN*GISDFNGRW 443
W++FSW W+F+P + + GI F W
Sbjct: 143 WMYFSWTWLFWPWFIAVGLAGYGIYYFRKHW 173
>ref|NP_200758.1| putative protein; protein id: At5g59500.1, supported by cDNA:
38797. [Arabidopsis thaliana] gi|8885555|dbj|BAA97485.1|
gene_id:F2O15.18~unknown protein [Arabidopsis thaliana]
gi|26983876|gb|AAN86190.1| unknown protein [Arabidopsis
thaliana]
Length = 396
Score = 31.6 bits (70), Expect = 6.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 535 WIHFSWIWVFFPLVLKPKVIN*GISDFNGRW 443
W++FSW W+F+P + + GI F W
Sbjct: 143 WMYFSWTWLFWPWFIAVGLAGYGIYCFRKHW 173
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,498,914
Number of Sequences: 1393205
Number of extensions: 10516210
Number of successful extensions: 23560
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23488
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
