Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000251A_C02 KMC000251A_c02
(708 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T08556 hypothetical protein F27B13.190 - Arabidopsis thalia... 59 5e-24
ref|NP_567836.1| putative protein; protein id: At4g29950.1, supp... 59 5e-24
pir||T52329 microtubule-associated protein [imported] - Arabidop... 59 5e-24
dbj|BAC57324.1| putative microtubule-associated protein [Oryza s... 55 6e-20
ref|NP_179514.1| hypothetical protein; protein id: At2g19240.1 [... 50 4e-13
>pir||T08556 hypothetical protein F27B13.190 - Arabidopsis thaliana
gi|4914419|emb|CAB43670.1| putative protein [Arabidopsis
thaliana] gi|7269894|emb|CAB79753.1| putative protein
[Arabidopsis thaliana] gi|18377650|gb|AAL66975.1|
unknown protein [Arabidopsis thaliana]
gi|20465437|gb|AAM20178.1| unknown protein [Arabidopsis
thaliana]
Length = 828
Score = 58.9 bits (141), Expect(3) = 5e-24
Identities = 32/53 (60%), Positives = 36/53 (67%)
Frame = -2
Query: 509 PRRASSTSNGHCSSVSYGGESVDQNVMGTLKNLGQSMLDHIQVIESVFQQDRG 351
P+ +SS S G DQNVM TLKNLG SML+HIQVIESVFQQ+RG
Sbjct: 746 PQASSSGSKG----------DTDQNVMNTLKNLGNSMLEHIQVIESVFQQERG 788
Score = 57.0 bits (136), Expect(3) = 5e-24
Identities = 32/48 (66%), Positives = 37/48 (76%), Gaps = 1/48 (2%)
Frame = -3
Query: 376 NLFSNKTGD-QGASMENLSKNVLVGKGQVTAVTALKELRKISNLLSEM 236
++F + G Q +ENLSKN LV KGQVTA+TALKELRKISNLL EM
Sbjct: 781 SVFQQERGQVQAGLIENLSKNNLVEKGQVTAMTALKELRKISNLLLEM 828
Score = 37.4 bits (85), Expect(3) = 5e-24
Identities = 26/67 (38%), Positives = 36/67 (52%), Gaps = 7/67 (10%)
Frame = -1
Query: 693 PQTCNNDDSG---NSVTHPKERK---PNQFQWLWKFGRNNADVISEKVG-GAAEATKPTN 535
P T +ND+ SV + KER P +FQW WKFGRN V +E+ E++K
Sbjct: 680 PVTQSNDEDNAADKSVANIKERSKVLPGKFQWFWKFGRN---VTAEETRCNGVESSKSDL 736
Query: 534 SSSSQSN 514
SS+S+
Sbjct: 737 VCSSESH 743
>ref|NP_567836.1| putative protein; protein id: At4g29950.1, supported by cDNA:
gi_5032257 [Arabidopsis thaliana]
Length = 703
Score = 58.9 bits (141), Expect(3) = 5e-24
Identities = 32/53 (60%), Positives = 36/53 (67%)
Frame = -2
Query: 509 PRRASSTSNGHCSSVSYGGESVDQNVMGTLKNLGQSMLDHIQVIESVFQQDRG 351
P+ +SS S G DQNVM TLKNLG SML+HIQVIESVFQQ+RG
Sbjct: 621 PQASSSGSKG----------DTDQNVMNTLKNLGNSMLEHIQVIESVFQQERG 663
Score = 57.0 bits (136), Expect(3) = 5e-24
Identities = 32/48 (66%), Positives = 37/48 (76%), Gaps = 1/48 (2%)
Frame = -3
Query: 376 NLFSNKTGD-QGASMENLSKNVLVGKGQVTAVTALKELRKISNLLSEM 236
++F + G Q +ENLSKN LV KGQVTA+TALKELRKISNLL EM
Sbjct: 656 SVFQQERGQVQAGLIENLSKNNLVEKGQVTAMTALKELRKISNLLLEM 703
Score = 37.4 bits (85), Expect(3) = 5e-24
Identities = 26/67 (38%), Positives = 36/67 (52%), Gaps = 7/67 (10%)
Frame = -1
Query: 693 PQTCNNDDSG---NSVTHPKERK---PNQFQWLWKFGRNNADVISEKVG-GAAEATKPTN 535
P T +ND+ SV + KER P +FQW WKFGRN V +E+ E++K
Sbjct: 555 PVTQSNDEDNAADKSVANIKERSKVLPGKFQWFWKFGRN---VTAEETRCNGVESSKSDL 611
Query: 534 SSSSQSN 514
SS+S+
Sbjct: 612 VCSSESH 618
>pir||T52329 microtubule-associated protein [imported] - Arabidopsis thaliana
gi|5032258|gb|AAD37016.2| microtubule-associated protein
[Arabidopsis thaliana]
Length = 682
Score = 58.9 bits (141), Expect(3) = 5e-24
Identities = 32/53 (60%), Positives = 36/53 (67%)
Frame = -2
Query: 509 PRRASSTSNGHCSSVSYGGESVDQNVMGTLKNLGQSMLDHIQVIESVFQQDRG 351
P+ +SS S G DQNVM TLKNLG SML+HIQVIESVFQQ+RG
Sbjct: 600 PQASSSGSKG----------DTDQNVMNTLKNLGNSMLEHIQVIESVFQQERG 642
Score = 57.0 bits (136), Expect(3) = 5e-24
Identities = 32/48 (66%), Positives = 37/48 (76%), Gaps = 1/48 (2%)
Frame = -3
Query: 376 NLFSNKTGD-QGASMENLSKNVLVGKGQVTAVTALKELRKISNLLSEM 236
++F + G Q +ENLSKN LV KGQVTA+TALKELRKISNLL EM
Sbjct: 635 SVFQQERGQVQAGLIENLSKNNLVEKGQVTAMTALKELRKISNLLLEM 682
Score = 37.4 bits (85), Expect(3) = 5e-24
Identities = 26/67 (38%), Positives = 36/67 (52%), Gaps = 7/67 (10%)
Frame = -1
Query: 693 PQTCNNDDSG---NSVTHPKERK---PNQFQWLWKFGRNNADVISEKVG-GAAEATKPTN 535
P T +ND+ SV + KER P +FQW WKFGRN V +E+ E++K
Sbjct: 534 PVTQSNDEDNAADKSVANIKERSKVLPGKFQWFWKFGRN---VTAEETRCNGVESSKSDL 590
Query: 534 SSSSQSN 514
SS+S+
Sbjct: 591 VCSSESH 597
>dbj|BAC57324.1| putative microtubule-associated protein [Oryza sativa (japonica
cultivar-group)]
Length = 834
Score = 55.1 bits (131), Expect(3) = 6e-20
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Frame = -2
Query: 512 DPRRASSTSNGHCSSVSYGGESVDQNVMGTLKNLGQSMLDHIQVIESVFQQDRG-PG 345
D + S N + S S S D+ VMG+LKNLGQ+ML++IQVIES FQQDRG PG
Sbjct: 743 DTSCSPSDGNSNNSRGSVKLASGDKKVMGSLKNLGQNMLENIQVIESAFQQDRGQPG 799
Score = 53.1 bits (126), Expect(3) = 6e-20
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = -3
Query: 349 QGASMENLSKNVLVGKGQVTAVTALKELRKISNLLSEM 236
Q +EN S N+L GKGQVTA+ AL ELRKISNLLSEM
Sbjct: 797 QPGPVENFSNNILGGKGQVTAMAALTELRKISNLLSEM 834
Score = 31.2 bits (69), Expect(3) = 6e-20
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 642 ERKP--NQFQWLWKFGRNNADVISEKVGGAAEATKPTNSSS 526
ERKP ++FQWL K GR + + EK G A K +S
Sbjct: 705 ERKPFISKFQWLLKLGRPSVEGNMEKSSGETSADKQDGDTS 745
>ref|NP_179514.1| hypothetical protein; protein id: At2g19240.1 [Arabidopsis
thaliana] gi|7486249|pir||T01272 hypothetical protein
At2g19240 [imported] - Arabidopsis thaliana
gi|3135254|gb|AAC16454.1| hypothetical protein
[Arabidopsis thaliana]
Length = 840
Score = 50.1 bits (118), Expect(2) = 4e-13
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -3
Query: 331 NLSKNVLVGKGQVTAVTALKELRKISNLLSEM 236
NL+K L+ KGQVTA TALKELRK+SNLLSEM
Sbjct: 809 NLAKTNLIEKGQVTATTALKELRKLSNLLSEM 840
Score = 46.2 bits (108), Expect(2) = 4e-13
Identities = 25/44 (56%), Positives = 30/44 (67%)
Frame = -2
Query: 488 SNGHCSSVSYGGESVDQNVMGTLKNLGQSMLDHIQVIESVFQQD 357
S H ++S G S QN+ TLKNLGQSML HI+ IE VFQQ+
Sbjct: 757 SESHPQALSSGDSS--QNLRKTLKNLGQSMLKHIEAIELVFQQE 798
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 604,671,951
Number of Sequences: 1393205
Number of extensions: 13274548
Number of successful extensions: 31105
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 30132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31097
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
