Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000248A_C01 KMC000248A_c01
(658 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190745.1| putative protein; protein id: At3g51770.1 [Arab... 44 0.002
ref|NP_200663.1| putative protein; protein id: At5g58550.1 [Arab... 44 0.002
dbj|BAA97325.1| gb|AAC14404.1~gene_id:MZN1.1~strong similarity t... 44 0.002
dbj|BAC65354.1| OJ1361_E02.1 [Oryza sativa (japonica cultivar-gr... 39 0.061
ref|NP_192177.1| hypothetical protein; protein id: At4g02680.1 [... 38 0.10
>ref|NP_190745.1| putative protein; protein id: At3g51770.1 [Arabidopsis thaliana]
gi|11280528|pir||T51148 hypothetical protein [imported] -
Arabidopsis thaliana gi|3068704|gb|AAC14404.1| unknown
[Arabidopsis thaliana]
Length = 958
Score = 43.5 bits (101), Expect = 0.002
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = -3
Query: 644 STVRDCEAALCLDPNHTETLELRDKAWE 561
S ++DCEAALC+DP H +TLEL KA E
Sbjct: 926 SAIKDCEAALCIDPGHADTLELYHKARE 953
>ref|NP_200663.1| putative protein; protein id: At5g58550.1 [Arabidopsis thaliana]
Length = 925
Score = 43.5 bits (101), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -3
Query: 635 RDCEAALCLDPNHTETLELRDKAWEQ 558
+DCEAALCLDPNHTETL L ++ +Q
Sbjct: 888 QDCEAALCLDPNHTETLHLYSRSKDQ 913
>dbj|BAA97325.1| gb|AAC14404.1~gene_id:MZN1.1~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 833
Score = 43.5 bits (101), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -3
Query: 635 RDCEAALCLDPNHTETLELRDKAWEQ 558
+DCEAALCLDPNHTETL L ++ +Q
Sbjct: 796 QDCEAALCLDPNHTETLHLYSRSKDQ 821
>dbj|BAC65354.1| OJ1361_E02.1 [Oryza sativa (japonica cultivar-group)]
Length = 886
Score = 38.9 bits (89), Expect = 0.061
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = -3
Query: 653 DYVSTVRDCEAALCLDPNHTETLELRDKAWEQ 558
D S +RDC AAL LDPNH E LEL+ + Q
Sbjct: 853 DVPSALRDCRAALSLDPNHQEMLELQKRVNSQ 884
>ref|NP_192177.1| hypothetical protein; protein id: At4g02680.1 [Arabidopsis
thaliana] gi|7452456|pir||T01081 hypothetical protein
T10P11.3.2 - Arabidopsis thaliana
gi|3892057|gb|AAC78270.1|AAC78270 hypothetical protein
[Arabidopsis thaliana] gi|7269753|emb|CAB77753.1|
hypothetical protein [Arabidopsis thaliana]
Length = 888
Score = 38.1 bits (87), Expect = 0.10
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = -3
Query: 653 DYVSTVRDCEAALCLDPNHTETLELRDK 570
D S +RDC AAL +DPNH E LEL +
Sbjct: 855 DVTSALRDCRAALSVDPNHQEMLELHSR 882
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,768,434
Number of Sequences: 1393205
Number of extensions: 11525541
Number of successful extensions: 36811
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 35418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36798
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
