Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000241A_C01 KMC000241A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN72051.1| cell cycle control crn (crooked neck) protein-lik... 110 2e-23
ref|NP_198992.1| cell cycle control crn (crooked neck) protein-l... 110 2e-23
ref|NP_199411.1| CRN (crooked neck) protein; protein id: At5g459... 98 6e-20
pir||T45742 crooked neck-like protein - Arabidopsis thaliana gi|... 92 4e-18
ref|NP_187927.1| crn-like protein; protein id: At3g13210.1 [Arab... 92 6e-18
>gb|AAN72051.1| cell cycle control crn (crooked neck) protein-like [Arabidopsis
thaliana]
Length = 705
Score = 110 bits (274), Expect = 2e-23
Identities = 50/69 (72%), Positives = 62/69 (89%)
Frame = -3
Query: 561 GELGDVSLVQSQLPKKLKKRRHVPTEDGSSRIEEFIDYLFPEETQTTNLKILEAAYKWKK 382
G LGDVS+VQS+LPKKLKKR+ + EDGS+ EE+IDYL+PEE+QTTNLKILEAAYKWKK
Sbjct: 637 GNLGDVSIVQSKLPKKLKKRKAITREDGSTEYEEYIDYLYPEESQTTNLKILEAAYKWKK 696
Query: 381 QKLSSDDDD 355
QK+++ +DD
Sbjct: 697 QKVAASEDD 705
>ref|NP_198992.1| cell cycle control crn (crooked neck) protein-like; protein id:
At5g41770.1 [Arabidopsis thaliana]
gi|10177361|dbj|BAB10652.1| cell cycle control crn
(crooked neck) protein-like [Arabidopsis thaliana]
Length = 665
Score = 110 bits (274), Expect = 2e-23
Identities = 50/69 (72%), Positives = 62/69 (89%)
Frame = -3
Query: 561 GELGDVSLVQSQLPKKLKKRRHVPTEDGSSRIEEFIDYLFPEETQTTNLKILEAAYKWKK 382
G LGDVS+VQS+LPKKLKKR+ + EDGS+ EE+IDYL+PEE+QTTNLKILEAAYKWKK
Sbjct: 597 GNLGDVSIVQSKLPKKLKKRKAITREDGSTEYEEYIDYLYPEESQTTNLKILEAAYKWKK 656
Query: 381 QKLSSDDDD 355
QK+++ +DD
Sbjct: 657 QKVAASEDD 665
>ref|NP_199411.1| CRN (crooked neck) protein; protein id: At5g45990.1 [Arabidopsis
thaliana] gi|9757719|dbj|BAB08244.1| CRN (crooked neck)
protein [Arabidopsis thaliana]
Length = 673
Score = 98.2 bits (243), Expect = 6e-20
Identities = 47/62 (75%), Positives = 53/62 (84%)
Frame = -3
Query: 561 GELGDVSLVQSQLPKKLKKRRHVPTEDGSSRIEEFIDYLFPEETQTTNLKILEAAYKWKK 382
GELGDVS+VQS+LPKKLKKR+ EDGS+ EE+ DYLFPEE+ TTNLKILEAAYKWKK
Sbjct: 607 GELGDVSVVQSKLPKKLKKRKMTSREDGSTEYEEYFDYLFPEESGTTNLKILEAAYKWKK 666
Query: 381 QK 376
K
Sbjct: 667 LK 668
>pir||T45742 crooked neck-like protein - Arabidopsis thaliana
gi|6562263|emb|CAB62633.1| crooked neck-like protein
[Arabidopsis thaliana]
Length = 599
Score = 92.0 bits (227), Expect = 4e-18
Identities = 43/62 (69%), Positives = 51/62 (81%)
Frame = -3
Query: 552 GDVSLVQSQLPKKLKKRRHVPTEDGSSRIEEFIDYLFPEETQTTNLKILEAAYKWKKQKL 373
GDVS VQS+LPKKLKKR + EDG + EE+IDY FPEE+QT NLKILEAA+KWKKQK+
Sbjct: 537 GDVSAVQSKLPKKLKKRMPITREDGETEYEEYIDYFFPEESQTMNLKILEAAHKWKKQKV 596
Query: 372 SS 367
+
Sbjct: 597 DA 598
>ref|NP_187927.1| crn-like protein; protein id: At3g13210.1 [Arabidopsis thaliana]
Length = 657
Score = 91.7 bits (226), Expect = 6e-18
Identities = 42/67 (62%), Positives = 56/67 (82%)
Frame = -3
Query: 561 GELGDVSLVQSQLPKKLKKRRHVPTEDGSSRIEEFIDYLFPEETQTTNLKILEAAYKWKK 382
G+LGDV +VQS+LPKK+KKR+ EDG + EE+ DYLFPEE++TT+LKILEAA+KWKK
Sbjct: 589 GKLGDVRVVQSKLPKKVKKRKLSSREDGCTEYEEYTDYLFPEESETTSLKILEAAHKWKK 648
Query: 381 QKLSSDD 361
QK+ + +
Sbjct: 649 QKVKAGE 655
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,828,844
Number of Sequences: 1393205
Number of extensions: 8729855
Number of successful extensions: 19335
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 18838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19291
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
