Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000240A_C01 KMC000240A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL18926.1|AF429385_1 phosphomevalonate kinase [Hevea brasili... 135 3e-31
ref|NP_174473.1| unknown protein; protein id: At1g31910.1 [Arabi... 132 4e-30
ref|NP_593421.1| putative phosphomevalonate kinase [Schizosaccha... 49 5e-05
gb|AAA34596.1| phosphomevalonate kinase 45 0.001
ref|NP_013947.1| Involved in isoprene and ergosterol biosynthesi... 45 0.001
>gb|AAL18926.1|AF429385_1 phosphomevalonate kinase [Hevea brasiliensis]
Length = 503
Score = 135 bits (341), Expect = 3e-31
Identities = 65/89 (73%), Positives = 77/89 (86%)
Frame = -3
Query: 494 IQIEPETPTQLLDATMNLEGVLLAGVPGAGGYDAVFAVTLGDSSSNVTKVWGSLNVLAML 315
+ IEPE+ T+LLD TMN++GVLLAGVPGAGG+DAVFAVTLGDS +NV K W SLNVLA+L
Sbjct: 415 VPIEPESQTRLLDTTMNMDGVLLAGVPGAGGFDAVFAVTLGDSGTNVAKAWSSLNVLALL 474
Query: 314 VKEDPCGVSLESADPRTNEITSAVSSIHI 228
V+EDP GV LES DPRT EIT+AV ++HI
Sbjct: 475 VREDPNGVLLESGDPRTKEITTAVFAVHI 503
>ref|NP_174473.1| unknown protein; protein id: At1g31910.1 [Arabidopsis thaliana]
gi|25353248|pir||C86443 unknown protein [imported] -
Arabidopsis thaliana
gi|12321295|gb|AAG50716.1|AC079041_9 unknown protein
[Arabidopsis thaliana]
Length = 505
Score = 132 bits (332), Expect = 4e-30
Identities = 64/91 (70%), Positives = 77/91 (84%)
Frame = -3
Query: 497 SIQIEPETPTQLLDATMNLEGVLLAGVPGAGGYDAVFAVTLGDSSSNVTKVWGSLNVLAM 318
S+ IEPE+ TQLLD+TM+ EGVLLAGVPGAGG+DA+FA+TLGDS + +T+ W S NVLA+
Sbjct: 415 SVPIEPESQTQLLDSTMSAEGVLLAGVPGAGGFDAIFAITLGDSGTKLTQAWSSHNVLAL 474
Query: 317 LVKEDPCGVSLESADPRTNEITSAVSSIHIE 225
LV+EDP GV LES DPRT ITS VSSIH+E
Sbjct: 475 LVREDPHGVCLESGDPRTTCITSGVSSIHLE 505
>ref|NP_593421.1| putative phosphomevalonate kinase [Schizosaccharomyces pombe]
gi|7492820|pir||T38650 probable phosphomevalonate kinase
- fission yeast (Schizosaccharomyces pombe)
gi|5706502|emb|CAB52264.1| putative phosphomevalonate
kinase [Schizosaccharomyces pombe]
Length = 426
Score = 48.9 bits (115), Expect = 5e-05
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = -3
Query: 494 IQIEPETPTQLLDATMNLEGVLLAGVPGAGGYDAVFAVTLGDSS--SNVTKVWGSLNVLA 321
+ IEP T +LD L GV+ GVPGAGG+DA F + + + NV K W V+
Sbjct: 354 VDIEPLKQTNILDNIEQLPGVIGVGVPGAGGFDAQFCLAINHTEIIENVIKTWKDDGVVP 413
Query: 320 MLVKEDPCGVSLE 282
M V G+++E
Sbjct: 414 MDVSPAFDGLAVE 426
>gb|AAA34596.1| phosphomevalonate kinase
Length = 424
Score = 44.7 bits (104), Expect = 0.001
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = -3
Query: 488 IEPETPTQLLDATMNLEGVLLAGVPGAGGYDAVFAVTLGD 369
IEP T LLD L+GVL +PGAGGYDA+ +T D
Sbjct: 372 IEPPVQTSLLDDCQTLKGVLTCLIPGAGGYDAIAVITKQD 411
>ref|NP_013947.1| Involved in isoprene and ergosterol biosynthesis pathways; Erg8p
[Saccharomyces cerevisiae]
gi|1706695|sp|P24521|ERG8_YEAST Phosphomevalonate kinase
gi|1362436|pir||S57588 phosphomevalonate kinase (EC
2.7.4.2) - yeast (Saccharomyces cerevisiae)
gi|887601|emb|CAA90191.1| Erg8p [Saccharomyces
cerevisiae]
Length = 451
Score = 44.7 bits (104), Expect = 0.001
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = -3
Query: 488 IEPETPTQLLDATMNLEGVLLAGVPGAGGYDAVFAVTLGD 369
IEP T LLD L+GVL +PGAGGYDA+ +T D
Sbjct: 372 IEPPVQTSLLDDCQTLKGVLTCLIPGAGGYDAIAVITKQD 411
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,276,252
Number of Sequences: 1393205
Number of extensions: 10897229
Number of successful extensions: 32568
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 31303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32528
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
