Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000239A_C01 KMC000239A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177164.1| hypothetical protein; protein id: At1g70070.1 [... 164 1e-39
pir||D96723 hypothetical protein F20P5.20 [imported] - Arabidops... 164 1e-39
ref|ZP_00074862.1| hypothetical protein [Trichodesmium erythraeu... 80 3e-14
gb|ZP_00108825.1| hypothetical protein [Nostoc punctiforme] 72 7e-12
ref|NP_681140.1| ORF_ID:tlr0350~putative helicase [Thermosynecho... 67 1e-10
>ref|NP_177164.1| hypothetical protein; protein id: At1g70070.1 [Arabidopsis thaliana]
Length = 1171
Score = 164 bits (414), Expect = 1e-39
Identities = 88/146 (60%), Positives = 108/146 (73%), Gaps = 5/146 (3%)
Frame = -2
Query: 611 IRGENELWLAMVLRSKILVGLKPPQLAXVCAGLVSEGIKVRPWKNNSFIYEPSATVVNCI 432
IRGENELWLAMVLR+K LV LKPPQLA VCA LVSEGIKVRPW++N++IYEPS TVV+ +
Sbjct: 1011 IRGENELWLAMVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMV 1070
Query: 431 GLLGEPRSALLAIPGETTG*LYLAVWIPSSVVWLRHGLL-----G*HWREIMMDCAMDDG 267
L + RS+L+ + + V IP + G++ G W+E+MM+CAMD+G
Sbjct: 1071 NFLEDQRSSLIKLQEKH------EVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEG 1124
Query: 266 DLARLLRRTRDLLAQIPKLADIDPLL 189
DLARLLRRT DLLAQIPKL DIDP+L
Sbjct: 1125 DLARLLRRTIDLLAQIPKLPDIDPVL 1150
>pir||D96723 hypothetical protein F20P5.20 [imported] - Arabidopsis thaliana
gi|2194131|gb|AAB61106.1| Similar to Synechocystis
antiviral protein (gb|D90917). [Arabidopsis thaliana]
Length = 1198
Score = 164 bits (414), Expect = 1e-39
Identities = 88/146 (60%), Positives = 108/146 (73%), Gaps = 5/146 (3%)
Frame = -2
Query: 611 IRGENELWLAMVLRSKILVGLKPPQLAXVCAGLVSEGIKVRPWKNNSFIYEPSATVVNCI 432
IRGENELWLAMVLR+K LV LKPPQLA VCA LVSEGIKVRPW++N++IYEPS TVV+ +
Sbjct: 1038 IRGENELWLAMVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMV 1097
Query: 431 GLLGEPRSALLAIPGETTG*LYLAVWIPSSVVWLRHGLL-----G*HWREIMMDCAMDDG 267
L + RS+L+ + + V IP + G++ G W+E+MM+CAMD+G
Sbjct: 1098 NFLEDQRSSLIKLQEKH------EVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEG 1151
Query: 266 DLARLLRRTRDLLAQIPKLADIDPLL 189
DLARLLRRT DLLAQIPKL DIDP+L
Sbjct: 1152 DLARLLRRTIDLLAQIPKLPDIDPVL 1177
>ref|ZP_00074862.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 905
Score = 79.7 bits (195), Expect = 3e-14
Identities = 50/133 (37%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Frame = -2
Query: 611 IRGENELWLAMVLRSKILVGLKPPQLAXVCAGLVSEGIKVRPWKNNSFIYEPSATVVNCI 432
IRG+NELWL +VL S L P LA CAGLV+E + W YE S V +
Sbjct: 747 IRGDNELWLGLVLMSGSFDELDPHHLATACAGLVTEITRPDSWTR----YELSVEVKEAM 802
Query: 431 GLLGEPRSALLAIPGETTG*LYLAVWIPSSVVWL-RHGLLG*HWREIMMDCAMDDGDLAR 255
L R L + + L VW+ ++ L LG W E++ + ++D+GD+ R
Sbjct: 803 ASLRNLRHQLFQVQHRHQ--VALPVWLERDLIALVEQWALGVEWEELVNNASLDEGDVVR 860
Query: 254 LLRRTRDLLAQIP 216
+LRRT D L+QIP
Sbjct: 861 MLRRTLDFLSQIP 873
>gb|ZP_00108825.1| hypothetical protein [Nostoc punctiforme]
Length = 891
Score = 71.6 bits (174), Expect = 7e-12
Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Frame = -2
Query: 611 IRGENELWLAMVLRSKILVGLKPPQLAXVCAGLVSEGIKVRPWKNNSFIYEPSATVVNCI 432
IRGENELWL +V S L L P LA AGLV E P ++ +E S V +
Sbjct: 735 IRGENELWLGLVFASGELDNLDPHHLAAAAAGLVME----TPRPDSKVNFELSNEVAEAL 790
Query: 431 GLLGEPRSALLAIPGETTG*LYLAVWIPSSVVWL-RHGLLG*HWREIMMDCAMDDGDLAR 255
L R + + + L +W+ ++ + LG W E+ + +D+GD+ R
Sbjct: 791 AKLRGIRRQMFQLQRRYN--VALPIWLEFELIAIVEQWALGMEWTELCENTTLDEGDVVR 848
Query: 254 LLRRTRDLLAQIP 216
+LRRT DLL+QIP
Sbjct: 849 ILRRTLDLLSQIP 861
>ref|NP_681140.1| ORF_ID:tlr0350~putative helicase [Thermosynechococcus elongatus BP-1]
gi|22294071|dbj|BAC07902.1| ORF_ID:tlr0350~putative
helicase [Thermosynechococcus elongatus BP-1]
Length = 889
Score = 67.4 bits (163), Expect = 1e-10
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Frame = -2
Query: 611 IRGENELWLAMVLRSKILVGLKPPQLAXVCAGLVSEGIKVRPWKNNSFIYEPSATVVNCI 432
+RGENELWLA+ L S L L P LA A LV+E + W N Y + V +
Sbjct: 724 LRGENELWLALALASGELNDLPPHLLAAAVAALVTETPRSDSWCN----YPIPSEVEERL 779
Query: 431 GLLGEPRSALLAIPGETTG*LYLAVWIPSSVVWL-RHGLLG*HWREIMMDCAMDDGDLAR 255
L R L + + +W ++ L LG W E+ +D GD+ R
Sbjct: 780 AALSPIRRRLFQVQRRYQ--IIFPLWYEWDLIGLVEQWALGTPWHELCAQTNLDAGDIVR 837
Query: 254 LLRRTRDLLAQIPKLADIDPLLPAPCQ 174
LLRRT D L+QIP P L Q
Sbjct: 838 LLRRTLDFLSQIPHAPHTSPQLRQSAQ 864
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 582,584,035
Number of Sequences: 1393205
Number of extensions: 13537252
Number of successful extensions: 32248
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 31143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32204
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
