Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000238A_C01 KMC000238A_c01
(759 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196230.1| human RAN binding protein 16-like; protein id: ... 79 9e-14
dbj|BAA89552.1| unnamed protein product [Oryza sativa (japonica ... 72 7e-12
dbj|BAC25870.1| unnamed protein product [Mus musculus] 48 2e-04
dbj|BAC29600.1| unnamed protein product [Mus musculus] 48 2e-04
dbj|BAA34465.1| KIAA0745 protein [Homo sapiens] 48 2e-04
>ref|NP_196230.1| human RAN binding protein 16-like; protein id: At5g06120.1
[Arabidopsis thaliana] gi|8978348|dbj|BAA98201.1| human
RAN binding protein 16-like [Arabidopsis thaliana]
Length = 1059
Score = 78.6 bits (192), Expect = 9e-14
Identities = 36/50 (72%), Positives = 39/50 (78%)
Frame = -1
Query: 759 ILSSXPMDQHQRLSLCFDKLMXDVTLSLDSKTRDKFTQNLTIFRHEFRAK 610
IL P DQHQRLS CFD LM D++ LDSK RDKFTQNLT+FRHEFR K
Sbjct: 1010 ILMVQPADQHQRLSACFDSLMTDISRGLDSKNRDKFTQNLTLFRHEFRVK 1059
>dbj|BAA89552.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 799
Score = 72.4 bits (176), Expect = 7e-12
Identities = 33/50 (66%), Positives = 40/50 (80%)
Frame = -1
Query: 759 ILSSXPMDQHQRLSLCFDKLMXDVTLSLDSKTRDKFTQNLTIFRHEFRAK 610
IL+S P+DQ QRLS CF+KLM DV +L+ K RDKFT+NLT FRH+FR K
Sbjct: 746 ILASQPVDQQQRLSQCFEKLMSDVARNLEPKNRDKFTKNLTTFRHDFRVK 795
>dbj|BAC25870.1| unnamed protein product [Mus musculus]
Length = 1035
Score = 47.8 bits (112), Expect = 2e-04
Identities = 21/46 (45%), Positives = 32/46 (68%)
Frame = -1
Query: 759 ILSSXPMDQHQRLSLCFDKLMXDVTLSLDSKTRDKFTQNLTIFRHE 622
I++S P ++ Q + LCF+ LM + +L +K RD+FTQNL+ FR E
Sbjct: 971 IVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRDRFTQNLSAFRRE 1016
>dbj|BAC29600.1| unnamed protein product [Mus musculus]
Length = 1035
Score = 47.8 bits (112), Expect = 2e-04
Identities = 21/46 (45%), Positives = 32/46 (68%)
Frame = -1
Query: 759 ILSSXPMDQHQRLSLCFDKLMXDVTLSLDSKTRDKFTQNLTIFRHE 622
I++S P ++ Q + LCF+ LM + +L +K RD+FTQNL+ FR E
Sbjct: 971 IVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRDRFTQNLSAFRRE 1016
>dbj|BAA34465.1| KIAA0745 protein [Homo sapiens]
Length = 909
Score = 47.8 bits (112), Expect = 2e-04
Identities = 21/46 (45%), Positives = 32/46 (68%)
Frame = -1
Query: 759 ILSSXPMDQHQRLSLCFDKLMXDVTLSLDSKTRDKFTQNLTIFRHE 622
I++S P ++ Q + LCF+ LM + +L +K RD+FTQNL+ FR E
Sbjct: 845 IVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRDRFTQNLSAFRRE 890
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 638,838,003
Number of Sequences: 1393205
Number of extensions: 14182727
Number of successful extensions: 29295
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 28529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29292
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
