Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000237A_C02 KMC000237A_c02
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06370 probable DNA (cytosine-5-)-methyltransferase (EC 2.1... 155 2e-37
pir||T14289 DNA (cytosine-5-)-methyltransferase (EC 2.1.1.37), M... 152 2e-36
pir||T07757 probable DNA (cytosine-5-)-methyltransferase (EC 2.1... 150 6e-36
dbj|BAA92852.1| DNA (cytosine-5-)-methyltransferase [Nicotiana t... 149 2e-35
pir||T14288 DNA (cytosine-5-)-methyltransferase (EC 2.1.1.37), M... 144 5e-34
>pir||T06370 probable DNA (cytosine-5-)-methyltransferase (EC 2.1.1.37) - garden
pea gi|2654108|gb|AAC49931.1| cytosine-5 DNA
methyltransferase [Pisum sativum]
Length = 1554
Score = 155 bits (393), Expect = 2e-37
Identities = 72/77 (93%), Positives = 76/77 (98%)
Frame = -1
Query: 496 TSITDPQPMGQVGMCFHPDQDRILTVRECARSQGFPDNYQFSGNIIHKHRQIGNAVPPPL 317
TSITDPQPMG+VGMCFHPDQDRILTVRECARSQGFPD+YQFSGNIIHKHRQIGNAVPPPL
Sbjct: 1477 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDHYQFSGNIIHKHRQIGNAVPPPL 1536
Query: 316 AFALGRKLKEAVDSKGS 266
AFALGRKLKEA+DSK +
Sbjct: 1537 AFALGRKLKEALDSKSA 1553
>pir||T14289 DNA (cytosine-5-)-methyltransferase (EC 2.1.1.37), Met2-type - carrot
gi|2895089|gb|AAC39356.1| Met2-type cytosine
DNA-methyltransferase [Daucus carota]
Length = 1761
Score = 152 bits (384), Expect = 2e-36
Identities = 69/77 (89%), Positives = 76/77 (98%)
Frame = -1
Query: 496 TSITDPQPMGQVGMCFHPDQDRILTVRECARSQGFPDNYQFSGNIIHKHRQIGNAVPPPL 317
TSITDPQPMG+VGMCFHPDQDRI+TVRECARSQGFPD+YQF GNI+HKHRQIGNAVPPPL
Sbjct: 1684 TSITDPQPMGKVGMCFHPDQDRIVTVRECARSQGFPDSYQFYGNILHKHRQIGNAVPPPL 1743
Query: 316 AFALGRKLKEAVDSKGS 266
A+ALGRKLKEA++SKGS
Sbjct: 1744 AYALGRKLKEALESKGS 1760
>pir||T07757 probable DNA (cytosine-5-)-methyltransferase (EC 2.1.1.37) - tomato
gi|2887280|emb|CAA05207.1| DNA
(cytosine-5)-methyltransferase [Lycopersicon esculentum]
Length = 1559
Score = 150 bits (380), Expect = 6e-36
Identities = 68/75 (90%), Positives = 75/75 (99%)
Frame = -1
Query: 496 TSITDPQPMGQVGMCFHPDQDRILTVRECARSQGFPDNYQFSGNIIHKHRQIGNAVPPPL 317
TSITDPQPMG+VGMCFHPDQDRI+TVRECARSQGFPD+YQF+GNI+HKHRQIGNAVPPPL
Sbjct: 1481 TSITDPQPMGKVGMCFHPDQDRIVTVRECARSQGFPDSYQFAGNILHKHRQIGNAVPPPL 1540
Query: 316 AFALGRKLKEAVDSK 272
A+ALGRKLKEAV+SK
Sbjct: 1541 AYALGRKLKEAVESK 1555
>dbj|BAA92852.1| DNA (cytosine-5-)-methyltransferase [Nicotiana tabacum]
Length = 1556
Score = 149 bits (376), Expect = 2e-35
Identities = 67/75 (89%), Positives = 74/75 (98%)
Frame = -1
Query: 496 TSITDPQPMGQVGMCFHPDQDRILTVRECARSQGFPDNYQFSGNIIHKHRQIGNAVPPPL 317
TS TDPQPMG+VGMCFHPDQDRI+TVRECARSQGFPD+YQF+GNI+HKHRQIGNAVPPPL
Sbjct: 1478 TSFTDPQPMGKVGMCFHPDQDRIVTVRECARSQGFPDSYQFAGNILHKHRQIGNAVPPPL 1537
Query: 316 AFALGRKLKEAVDSK 272
A+ALGRKLKEAV+SK
Sbjct: 1538 AYALGRKLKEAVESK 1552
>pir||T14288 DNA (cytosine-5-)-methyltransferase (EC 2.1.1.37), Met1-type - carrot
gi|2895087|gb|AAC39355.1| Met1-type cytosine
DNA-methyltransferase [Daucus carota]
Length = 1545
Score = 144 bits (363), Expect = 5e-34
Identities = 65/76 (85%), Positives = 73/76 (95%)
Frame = -1
Query: 496 TSITDPQPMGQVGMCFHPDQDRILTVRECARSQGFPDNYQFSGNIIHKHRQIGNAVPPPL 317
TSITDPQPMG+VGMCFHPDQ RI+TVRECARSQGFPD+YQF GNI+HKH+QIGNAVPPPL
Sbjct: 1468 TSITDPQPMGKVGMCFHPDQHRIVTVRECARSQGFPDSYQFYGNILHKHQQIGNAVPPPL 1527
Query: 316 AFALGRKLKEAVDSKG 269
A+ALG KLKEA++SKG
Sbjct: 1528 AYALGMKLKEALESKG 1543
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,057,179
Number of Sequences: 1393205
Number of extensions: 9072251
Number of successful extensions: 18157
Number of sequences better than 10.0: 236
Number of HSP's better than 10.0 without gapping: 17715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18114
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
