Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000233A_C03 KMC000233A_c03
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179609.2| unknown protein; protein id: At2g20190.1, suppo... 124 1e-27
pir||B84586 hypothetical protein At2g20190 [imported] - Arabidop... 124 1e-27
gb|AAM13846.1| unknown protein [Arabidopsis thaliana] 124 1e-27
gb|EAA42576.1| GLP_487_14754_11830 [Giardia lamblia ATCC 50803] 73 3e-12
dbj|BAC41436.1| mKIAA0627 protein [Mus musculus] 54 1e-06
>ref|NP_179609.2| unknown protein; protein id: At2g20190.1, supported by cDNA:
gi_20259451 [Arabidopsis thaliana]
Length = 1330
Score = 124 bits (310), Expect = 1e-27
Identities = 61/71 (85%), Positives = 67/71 (93%)
Frame = -2
Query: 582 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNTTQLKLVTIYANRI 403
L SFLPA+FEAFG+QSADVRKTVVFCLVDIYIMLGKAFLPYL+GLN+TQ++LVTIYANRI
Sbjct: 1258 LSSFLPAVFEAFGSQSADVRKTVVFCLVDIYIMLGKAFLPYLEGLNSTQVRLVTIYANRI 1317
Query: 402 SQARTGKAIDA 370
SQAR G IDA
Sbjct: 1318 SQARNGAPIDA 1328
>pir||B84586 hypothetical protein At2g20190 [imported] - Arabidopsis thaliana
gi|4580455|gb|AAD24379.1| unknown protein [Arabidopsis
thaliana]
Length = 351
Score = 124 bits (310), Expect = 1e-27
Identities = 61/71 (85%), Positives = 67/71 (93%)
Frame = -2
Query: 582 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNTTQLKLVTIYANRI 403
L SFLPA+FEAFG+QSADVRKTVVFCLVDIYIMLGKAFLPYL+GLN+TQ++LVTIYANRI
Sbjct: 279 LSSFLPAVFEAFGSQSADVRKTVVFCLVDIYIMLGKAFLPYLEGLNSTQVRLVTIYANRI 338
Query: 402 SQARTGKAIDA 370
SQAR G IDA
Sbjct: 339 SQARNGAPIDA 349
>gb|AAM13846.1| unknown protein [Arabidopsis thaliana]
Length = 1439
Score = 124 bits (310), Expect = 1e-27
Identities = 61/71 (85%), Positives = 67/71 (93%)
Frame = -2
Query: 582 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNTTQLKLVTIYANRI 403
L SFLPA+FEAFG+QSADVRKTVVFCLVDIYIMLGKAFLPYL+GLN+TQ++LVTIYANRI
Sbjct: 1367 LSSFLPAVFEAFGSQSADVRKTVVFCLVDIYIMLGKAFLPYLEGLNSTQVRLVTIYANRI 1426
Query: 402 SQARTGKAIDA 370
SQAR G IDA
Sbjct: 1427 SQARNGAPIDA 1437
>gb|EAA42576.1| GLP_487_14754_11830 [Giardia lamblia ATCC 50803]
Length = 974
Score = 72.8 bits (177), Expect = 3e-12
Identities = 32/64 (50%), Positives = 46/64 (71%)
Frame = -2
Query: 582 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNTTQLKLVTIYANRI 403
+ S P L AF N++ D+RK VV+CLVD+Y ++G+ F PYL L+ +QLKLVTIY ++
Sbjct: 906 IDSVFPGLMRAFSNENPDIRKAVVYCLVDLYYLVGEDFTPYLNRLSASQLKLVTIYVVKM 965
Query: 402 SQAR 391
S+ R
Sbjct: 966 SEKR 969
>dbj|BAC41436.1| mKIAA0627 protein [Mus musculus]
Length = 1187
Score = 54.3 bits (129), Expect = 1e-06
Identities = 25/68 (36%), Positives = 41/68 (59%)
Frame = -2
Query: 582 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNTTQLKLVTIYANRI 403
LP +P L + + N + VRK VFCLV ++ ++G P+L L +++KL+ +Y I
Sbjct: 1111 LPEIMPGLIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLLNLY---I 1167
Query: 402 SQARTGKA 379
+A+TG A
Sbjct: 1168 KRAQTGSA 1175
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,756,987
Number of Sequences: 1393205
Number of extensions: 11551984
Number of successful extensions: 33367
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 32033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33317
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
