Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000232A_C13 KMC000232A_c13
(899 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK44155.1|AF370340_1 putative mitochondrial dicarboxylate ca... 134 2e-30
ref|NP_179836.1| mitochondrial carrier protein family; protein i... 134 2e-30
gb|AAM63236.1| putative mitochondrial dicarboxylate carrier prot... 133 4e-30
ref|NP_194188.1| mitochondrial carrier protein family; protein i... 130 4e-29
ref|NP_493694.1| Mitochondrial carrier protein [Caenorhabditis e... 92 4e-23
>gb|AAK44155.1|AF370340_1 putative mitochondrial dicarboxylate carrier protein [Arabidopsis
thaliana]
Length = 313
Score = 134 bits (336), Expect = 2e-30
Identities = 78/136 (57%), Positives = 89/136 (65%)
Frame = -3
Query: 897 VRMQXDGRLPAAQRRNYSSVVDAITRMAKQEGVTSLWRGSSLTVNRAMLVTASQLASYDQ 718
VRMQ DGRLP RRNY SV+DAIT+M + EGVTSLWRGSSLT+NRAMLVT+SQLASYD
Sbjct: 145 VRMQADGRLPLTDRRNYKSVLDAITQMIRGEGVTSLWRGSSLTINRAMLVTSSQLASYDS 204
Query: 717 FKEMILEKGLMRDGLGTHVTGEFRVGVCGGGCVEPG*CD*DEGDEHEGGAWGRRPPYPRR 538
KE ILEKGL++DGLGTHV+ F G P + A G PPY
Sbjct: 205 VKETILEKGLLKDGLGTHVSASFAAGFVASVASNPVDVIKTRVMNMKVVA-GVAPPYKGA 263
Query: 537 VGLCP*TTVRAEGPMA 490
V C TV+AEG M+
Sbjct: 264 VD-CALKTVKAEGIMS 278
Score = 90.5 bits (223), Expect = 3e-17
Identities = 59/98 (60%), Positives = 67/98 (68%)
Frame = -1
Query: 677 GLGPT*PASFASGFVAAVASNPVDVIKTRVMNMKVEPGGGGRRTPGALDCALERLCVLRD 498
GLG ASFA+GFVA+VASNPVDVIKTRVMNMKV G GA+DCAL+ +
Sbjct: 218 GLGTHVSASFAAGFVASVASNPVDVIKTRVMNMKVV-AGVAPPYKGAVDCALKTVKA-EG 275
Query: 497 PWPLYKGFIPTISRPRDPSPVVLFVTLEPGPPRCFKDY 384
LYKGFIPT+SR + P VVLFVTLE + FKDY
Sbjct: 276 IMSLYKGFIPTVSR-QAPFTVVLFVTLEQ-VKKLFKDY 311
>ref|NP_179836.1| mitochondrial carrier protein family; protein id: At2g22500.1,
supported by cDNA: 20723., supported by cDNA:
gi_13877658, supported by cDNA: gi_13878154 [Arabidopsis
thaliana] gi|25295876|pir||D84613 hypothetical protein
At2g22500 [imported] - Arabidopsis thaliana
gi|4544443|gb|AAD22351.1| putative mitochondrial
dicarboxylate carrier protein [Arabidopsis thaliana]
gi|13877659|gb|AAK43907.1|AF370588_1 putative
mitochondrial dicarboxylate carrier protein [Arabidopsis
thaliana] gi|23297154|gb|AAN13106.1| putative
mitochondrial dicarboxylate carrier protein [Arabidopsis
thaliana]
Length = 313
Score = 134 bits (336), Expect = 2e-30
Identities = 78/136 (57%), Positives = 89/136 (65%)
Frame = -3
Query: 897 VRMQXDGRLPAAQRRNYSSVVDAITRMAKQEGVTSLWRGSSLTVNRAMLVTASQLASYDQ 718
VRMQ DGRLP RRNY SV+DAIT+M + EGVTSLWRGSSLT+NRAMLVT+SQLASYD
Sbjct: 145 VRMQADGRLPLTDRRNYKSVLDAITQMIRGEGVTSLWRGSSLTINRAMLVTSSQLASYDS 204
Query: 717 FKEMILEKGLMRDGLGTHVTGEFRVGVCGGGCVEPG*CD*DEGDEHEGGAWGRRPPYPRR 538
KE ILEKGL++DGLGTHV+ F G P + A G PPY
Sbjct: 205 VKETILEKGLLKDGLGTHVSASFAAGFVASVASNPVDVIKTRVMNMKVVA-GVAPPYKGA 263
Query: 537 VGLCP*TTVRAEGPMA 490
V C TV+AEG M+
Sbjct: 264 VD-CALKTVKAEGIMS 278
Score = 90.5 bits (223), Expect = 3e-17
Identities = 59/98 (60%), Positives = 67/98 (68%)
Frame = -1
Query: 677 GLGPT*PASFASGFVAAVASNPVDVIKTRVMNMKVEPGGGGRRTPGALDCALERLCVLRD 498
GLG ASFA+GFVA+VASNPVDVIKTRVMNMKV G GA+DCAL+ +
Sbjct: 218 GLGTHVSASFAAGFVASVASNPVDVIKTRVMNMKVV-AGVAPPYKGAVDCALKTVKA-EG 275
Query: 497 PWPLYKGFIPTISRPRDPSPVVLFVTLEPGPPRCFKDY 384
LYKGFIPT+SR + P VVLFVTLE + FKDY
Sbjct: 276 IMSLYKGFIPTVSR-QAPFTVVLFVTLEQ-VKKLFKDY 311
>gb|AAM63236.1| putative mitochondrial dicarboxylate carrier protein [Arabidopsis
thaliana]
Length = 313
Score = 133 bits (334), Expect = 4e-30
Identities = 78/136 (57%), Positives = 88/136 (64%)
Frame = -3
Query: 897 VRMQXDGRLPAAQRRNYSSVVDAITRMAKQEGVTSLWRGSSLTVNRAMLVTASQLASYDQ 718
VRMQ DGRLP RRNY SV+DAIT+M + EGVTSLWRGSSLT+NRAMLVT+SQLASYD
Sbjct: 145 VRMQADGRLPLTDRRNYKSVLDAITQMIRGEGVTSLWRGSSLTINRAMLVTSSQLASYDS 204
Query: 717 FKEMILEKGLMRDGLGTHVTGEFRVGVCGGGCVEPG*CD*DEGDEHEGGAWGRRPPYPRR 538
KE ILEKGL++DGLGTHV F G P + A G PPY
Sbjct: 205 VKETILEKGLLKDGLGTHVLASFAAGFVASVASNPVDVIKTRVMNMKVVA-GVAPPYKGA 263
Query: 537 VGLCP*TTVRAEGPMA 490
V C TV+AEG M+
Sbjct: 264 VD-CALKTVKAEGIMS 278
Score = 87.4 bits (215), Expect = 3e-16
Identities = 58/98 (59%), Positives = 66/98 (67%)
Frame = -1
Query: 677 GLGPT*PASFASGFVAAVASNPVDVIKTRVMNMKVEPGGGGRRTPGALDCALERLCVLRD 498
GLG ASFA+GFVA+VASNPVDVIKTRVMNMKV G GA+DCAL+ +
Sbjct: 218 GLGTHVLASFAAGFVASVASNPVDVIKTRVMNMKVV-AGVAPPYKGAVDCALKTVKA-EG 275
Query: 497 PWPLYKGFIPTISRPRDPSPVVLFVTLEPGPPRCFKDY 384
LYKGFIPT+SR + P VVLFVTLE + KDY
Sbjct: 276 IMSLYKGFIPTVSR-QAPFTVVLFVTLEQ-VKKLLKDY 311
>ref|NP_194188.1| mitochondrial carrier protein family; protein id: At4g24570.1,
supported by cDNA: 119476., supported by cDNA:
gi_14596142 [Arabidopsis thaliana]
gi|7488415|pir||T05577 uncoupling protein homolog
F22K18.230 - Arabidopsis thaliana
gi|4220533|emb|CAA23006.1| putative mitochondrial
uncoupling protein [Arabidopsis thaliana]
gi|7269307|emb|CAB79367.1| putative mitochondrial
uncoupling protein [Arabidopsis thaliana]
gi|14596143|gb|AAK68799.1| putative mitochondrial
uncoupling protein [Arabidopsis thaliana]
gi|21537077|gb|AAM61418.1| putative mitochondrial
uncoupling protein [Arabidopsis thaliana]
Length = 313
Score = 130 bits (326), Expect = 4e-29
Identities = 64/86 (74%), Positives = 70/86 (80%)
Frame = -3
Query: 897 VRMQXDGRLPAAQRRNYSSVVDAITRMAKQEGVTSLWRGSSLTVNRAMLVTASQLASYDQ 718
VRMQ DGRLP AQRRNY+ V DAI M K EGVTSLWRGS+LT+NRAM+VTA+QLASYDQ
Sbjct: 152 VRMQADGRLPLAQRRNYAGVGDAIRSMVKGEGVTSLWRGSALTINRAMIVTAAQLASYDQ 211
Query: 717 FKEMILEKGLMRDGLGTHVTGEFRVG 640
FKE ILE G+M DGLGTHV F G
Sbjct: 212 FKEGILENGVMNDGLGTHVVASFAAG 237
Score = 81.3 bits (199), Expect = 2e-14
Identities = 51/88 (57%), Positives = 59/88 (66%)
Frame = -1
Query: 677 GLGPT*PASFASGFVAAVASNPVDVIKTRVMNMKVEPGGGGRRTPGALDCALERLCVLRD 498
GLG ASFA+GFVA+VASNPVDVIKTRVMNMKV GA DCA++ +
Sbjct: 225 GLGTHVVASFAAGFVASVASNPVDVIKTRVMNMKV------GAYDGAWDCAVKTV-KAEG 277
Query: 497 PWPLYKGFIPTISRPRDPSPVVLFVTLE 414
LYKGF+PT+ R + P VVLFVTLE
Sbjct: 278 AMALYKGFVPTVCR-QGPFTVVLFVTLE 304
>ref|NP_493694.1| Mitochondrial carrier protein [Caenorhabditis elegans]
gi|7494946|pir||T25459 hypothetical protein B0432.4 -
Caenorhabditis elegans
Length = 323
Score = 92.0 bits (227), Expect(2) = 4e-23
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = -3
Query: 897 VRMQXDGRLPAAQRRNYSSVVDAITRMAKQEGVTSLWRGSSLTVNRAMLVTASQLASYDQ 718
+RM DGRLP QRRNY+ VV+A+TR+ K+EGV +LWRG + TV RAM+V A+QLA+Y Q
Sbjct: 131 IRMTGDGRLPVEQRRNYTGVVNALTRITKEEGVLTLWRGCTPTVLRAMVVNAAQLATYSQ 190
Query: 717 FKEMILEKGLMRDGLGTH 664
K+ +L G ++DG+ H
Sbjct: 191 AKQALLASGKVQDGIFCH 208
Score = 38.9 bits (89), Expect(2) = 4e-23
Identities = 29/81 (35%), Positives = 40/81 (48%)
Frame = -1
Query: 656 ASFASGFVAAVASNPVDVIKTRVMNMKVEPGGGGRRTPGALDCALERLCVLRDPWPLYKG 477
AS SG +AS PVD+ KTR+ +MKV G + A D ++ + L+KG
Sbjct: 211 ASMISGLATTIASMPVDIAKTRIQSMKVIDGKPEYK--NAFD-VWGKVIKNEGIFALWKG 267
Query: 476 FIPTISRPRDPSPVVLFVTLE 414
F P R P V+ F+ LE
Sbjct: 268 FTPYYMR-LGPHTVLTFIILE 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 805,456,625
Number of Sequences: 1393205
Number of extensions: 20150012
Number of successful extensions: 98034
Number of sequences better than 10.0: 701
Number of HSP's better than 10.0 without gapping: 76140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94785
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 49333127949
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
