Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000226A_C01 KMC000226A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568374.1| putative protein; protein id: At5g19430.1, supp... 116 2e-25
ref|NP_568264.1| RING finger-like protein; protein id: At5g12310... 109 2e-23
dbj|BAB64711.1| P0431G06.23 [Oryza sativa (japonica cultivar-gro... 102 2e-21
emb|CAC94905.1| histone H1 [Mytilus chilensis] 39 0.031
emb|CAC94904.1| histone H1 [Mytilus californianus] 38 0.069
>ref|NP_568374.1| putative protein; protein id: At5g19430.1, supported by cDNA:
gi_13605552, supported by cDNA: gi_16323293 [Arabidopsis
thaliana] gi|13605553|gb|AAK32770.1|AF361602_1
AT5g19430/F7K24_180 [Arabidopsis thaliana]
gi|16323294|gb|AAL15402.1| AT5g19430/F7K24_180
[Arabidopsis thaliana]
Length = 255
Score = 116 bits (290), Expect = 2e-25
Identities = 63/101 (62%), Positives = 77/101 (75%), Gaps = 5/101 (4%)
Frame = -2
Query: 540 DAYYGGSSSFRIGNRRWGDHGYVRAGRQEARPVHR-SNTDNSGASSGASSSRQPKKKEAA 364
D +Y SS RIGNRRWG +G+VR+GRQEARPV R S + +S +SS SSS +PK K+
Sbjct: 156 DEFYLHGSSLRIGNRRWGGNGFVRSGRQEARPVQRYSGSGSSSSSSSGSSSSEPKDKQ-V 214
Query: 363 KSAATTGRRAKRALKREAADKAAE----AKHQQHLIRLGRK 253
K+ TTGRRAKRA+KREAA+KAAE AKH+ HL+RLGRK
Sbjct: 215 KTTNTTGRRAKRAMKREAANKAAEVTAAAKHEAHLVRLGRK 255
>ref|NP_568264.1| RING finger-like protein; protein id: At5g12310.1 [Arabidopsis
thaliana] gi|14586361|emb|CAC42892.1| RING finger-like
protein [Arabidopsis thaliana]
gi|21436021|gb|AAM51588.1| AT5g19430/F7K24_180
[Arabidopsis thaliana] gi|26450511|dbj|BAC42369.1|
putative RING finger [Arabidopsis thaliana]
Length = 254
Score = 109 bits (273), Expect = 2e-23
Identities = 61/102 (59%), Positives = 74/102 (71%), Gaps = 6/102 (5%)
Frame = -2
Query: 540 DAYYGGSSSFRIGNRRWGDHGYVRAGRQEARPVHRSNTDN--SGASSGASSSRQPKKKEA 367
D +Y SS R+GNRRWGD+G+VRAGRQEARPV N SG+ +SSS +PK+K
Sbjct: 156 DEFYMQGSSLRLGNRRWGDNGFVRAGRQEARPVQHKNRGGQASGSEPASSSSCEPKEK-- 213
Query: 366 AKSAATTGRRAKRALKREAADKAAE----AKHQQHLIRLGRK 253
S+A TGRRAKRA+KREAA+KAAE AKH+ L+RLGRK
Sbjct: 214 -TSSAITGRRAKRAMKREAANKAAEAVAAAKHEALLVRLGRK 254
>dbj|BAB64711.1| P0431G06.23 [Oryza sativa (japonica cultivar-group)]
gi|20161860|dbj|BAB90773.1| B1139B11.1 [Oryza sativa
(japonica cultivar-group)]
Length = 280
Score = 102 bits (255), Expect = 2e-21
Identities = 58/101 (57%), Positives = 69/101 (67%), Gaps = 7/101 (6%)
Frame = -2
Query: 540 DAYY-GGSSSFRIGNRRWGDHGYVRAGRQEARPVHRSNTDNSGASSGASSSRQPKKKEAA 364
+AYY S S RIGNRRWGD+GYVR GR+EARPV R + ++ + A SR PKKK+ +
Sbjct: 163 EAYYMSRSPSIRIGNRRWGDNGYVRGGRKEARPVSRQSLND----TDAGPSRTPKKKDVS 218
Query: 363 KSAA------TTGRRAKRALKREAADKAAEAKHQQHLIRLG 259
S + GRRAKRALKREAADKAA KH +HL RLG
Sbjct: 219 ASGSGSVSKEVAGRRAKRALKREAADKAAAEKHLKHLQRLG 259
>emb|CAC94905.1| histone H1 [Mytilus chilensis]
Length = 189
Score = 39.3 bits (90), Expect = 0.031
Identities = 27/81 (33%), Positives = 36/81 (44%)
Frame = -2
Query: 528 GGSSSFRIGNRRWGDHGYVRAGRQEARPVHRSNTDNSGASSGASSSRQPKKKEAAKSAAT 349
G S SFRIG A + + +P A+ + PKKK+AAK A
Sbjct: 96 GASGSFRIGE----------AKQAKKKPAKAKKAAKPKAAKPKKAKSTPKKKKAAKKPAG 145
Query: 348 TGRRAKRALKREAADKAAEAK 286
+ AK K+ AA KAA+ K
Sbjct: 146 EKKAAKPKAKKPAAKKAAKPK 166
>emb|CAC94904.1| histone H1 [Mytilus californianus]
Length = 190
Score = 38.1 bits (87), Expect = 0.069
Identities = 26/81 (32%), Positives = 36/81 (44%)
Frame = -2
Query: 528 GGSSSFRIGNRRWGDHGYVRAGRQEARPVHRSNTDNSGASSGASSSRQPKKKEAAKSAAT 349
G S SFRIG A + + +P A+ + P+KK+AAK A
Sbjct: 96 GASGSFRIGE----------AKQAKKKPAKAKKAAKPKAAKPKKAKSAPEKKKAAKEPAG 145
Query: 348 TGRRAKRALKREAADKAAEAK 286
+ AK K+ AA K A+AK
Sbjct: 146 EKKAAKPKAKKPAAKKGAKAK 166
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,210,401
Number of Sequences: 1393205
Number of extensions: 9934575
Number of successful extensions: 38419
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 35335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38102
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
