Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000223A_C01 KMC000223A_c01
(813 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM08829.1|AC113335_9 Putative SCARECROW gene regulator-like ... 129 5e-29
gb|AAN41283.1| putative scarecrow protein [Arabidopsis thaliana] 121 1e-26
gb|AAK59436.2| putative scarecrow protein [Arabidopsis thaliana] 121 1e-26
pir||T51236 scarecrow-like protein 5 [imported] - Arabidopsis th... 121 1e-26
ref|NP_175475.1| scarecrow-like protein; protein id: At1g50600.1... 121 1e-26
>gb|AAM08829.1|AC113335_9 Putative SCARECROW gene regulator-like [Oryza sativa (japonica
cultivar-group)]
Length = 524
Score = 129 bits (324), Expect = 5e-29
Identities = 57/94 (60%), Positives = 73/94 (77%)
Frame = -1
Query: 813 DKNSISAEQHCVARDIVNMIACEGXERVEXHELFGKWRSRFSMXGFVPCPLSSSVTASVR 634
DK +SAEQHCVARDIVN+IACEG ERVE HE+FGKW++R +M GF P PLSS V ++++
Sbjct: 430 DKRRMSAEQHCVARDIVNLIACEGAERVERHEVFGKWKARLTMAGFRPYPLSSVVNSTIK 489
Query: 633 NILNEFNENYRLEHKDVALYLTWKNRAMCTASAW 532
+L+ +N YRLE +D LYL WKNR + +SAW
Sbjct: 490 TLLHTYNSFYRLEERDGVLYLGWKNRVLVVSSAW 523
>gb|AAN41283.1| putative scarecrow protein [Arabidopsis thaliana]
Length = 597
Score = 121 bits (304), Expect = 1e-26
Identities = 54/94 (57%), Positives = 69/94 (72%)
Frame = -1
Query: 810 KNSISAEQHCVARDIVNMIACEGXERVEXHELFGKWRSRFSMXGFVPCPLSSSVTASVRN 631
K I+ EQHC+AR++VN+IACEG ER E HE GKWRSRF M GF P PLSS V A+++
Sbjct: 504 KERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKG 563
Query: 630 ILNEFNENYRLEHKDVALYLTWKNRAMCTASAWR 529
+L ++E Y LE +D ALYL WKN+ + T+ AWR
Sbjct: 564 LLESYSEKYTLEERDGALYLGWKNQPLITSCAWR 597
>gb|AAK59436.2| putative scarecrow protein [Arabidopsis thaliana]
Length = 587
Score = 121 bits (304), Expect = 1e-26
Identities = 54/94 (57%), Positives = 69/94 (72%)
Frame = -1
Query: 810 KNSISAEQHCVARDIVNMIACEGXERVEXHELFGKWRSRFSMXGFVPCPLSSSVTASVRN 631
K I+ EQHC+AR++VN+IACEG ER E HE GKWRSRF M GF P PLSS V A+++
Sbjct: 494 KERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKG 553
Query: 630 ILNEFNENYRLEHKDVALYLTWKNRAMCTASAWR 529
+L ++E Y LE +D ALYL WKN+ + T+ AWR
Sbjct: 554 LLESYSEKYTLEERDGALYLGWKNQPLITSCAWR 587
>pir||T51236 scarecrow-like protein 5 [imported] - Arabidopsis thaliana
(fragment) gi|4580517|gb|AAD24405.1|AF036302_1
scarecrow-like 5 [Arabidopsis thaliana]
Length = 306
Score = 121 bits (304), Expect = 1e-26
Identities = 54/94 (57%), Positives = 69/94 (72%)
Frame = -1
Query: 810 KNSISAEQHCVARDIVNMIACEGXERVEXHELFGKWRSRFSMXGFVPCPLSSSVTASVRN 631
K I+ EQHC+AR++VN+IACEG ER E HE GKWRSRF M GF P PLSS V A+++
Sbjct: 213 KERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKG 272
Query: 630 ILNEFNENYRLEHKDVALYLTWKNRAMCTASAWR 529
+L ++E Y LE +D ALYL WKN+ + T+ AWR
Sbjct: 273 LLESYSEKYTLEERDGALYLGWKNQPLITSCAWR 306
>ref|NP_175475.1| scarecrow-like protein; protein id: At1g50600.1, supported by cDNA:
gi_14334475, supported by cDNA: gi_14517551, supported
by cDNA: gi_17979104 [Arabidopsis thaliana]
gi|25405382|pir||E96542 scarecrow-like protein
[imported] - Arabidopsis thaliana
gi|9454552|gb|AAF87875.1|AC012561_8 Putative
transcription factor [Arabidopsis thaliana]
gi|12322334|gb|AAG51190.1|AC079279_11 scarecrow-like
protein [Arabidopsis thaliana]
Length = 526
Score = 121 bits (304), Expect = 1e-26
Identities = 54/94 (57%), Positives = 69/94 (72%)
Frame = -1
Query: 810 KNSISAEQHCVARDIVNMIACEGXERVEXHELFGKWRSRFSMXGFVPCPLSSSVTASVRN 631
K I+ EQHC+AR++VN+IACEG ER E HE GKWRSRF M GF P PLSS V A+++
Sbjct: 433 KERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKG 492
Query: 630 ILNEFNENYRLEHKDVALYLTWKNRAMCTASAWR 529
+L ++E Y LE +D ALYL WKN+ + T+ AWR
Sbjct: 493 LLESYSEKYTLEERDGALYLGWKNQPLITSCAWR 526
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 672,939,270
Number of Sequences: 1393205
Number of extensions: 14248273
Number of successful extensions: 31843
Number of sequences better than 10.0: 141
Number of HSP's better than 10.0 without gapping: 30784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31790
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41736604858
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
