Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000222A_C02 KMC000222A_c02
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF91178.1|AF203700_1 ClpB [Phaseolus lunatus] 209 3e-53
ref|NP_565586.1| HSP100/ClpB, putative; protein id: At2g25140.1,... 162 3e-39
pir||G84644 probable ATP-dependent CLPB protein [imported] - Ara... 162 3e-39
gb|AAN17424.1| HSP100/ClpB, putative [Arabidopsis thaliana] gi|2... 142 3e-33
ref|NP_568314.1| HSP100/ClpB, putative; protein id: At5g15450.1 ... 142 3e-33
>gb|AAF91178.1|AF203700_1 ClpB [Phaseolus lunatus]
Length = 977
Score = 209 bits (531), Expect = 3e-53
Identities = 108/126 (85%), Positives = 117/126 (92%)
Frame = -2
Query: 570 MNRIDEYIVFQPLDSKEISKIVELQMERVKNRLKQKKIDLHYTQEALELLSVLGFDPNFG 391
MNRIDEYIVFQPLDS++ISKIVELQMERVKNRLKQKKIDLH+T+EA++ L VLGFDPNFG
Sbjct: 852 MNRIDEYIVFQPLDSEQISKIVELQMERVKNRLKQKKIDLHFTEEAVKHLGVLGFDPNFG 911
Query: 390 ARPVKRVIQQLVENEIAMGVLRGDFKEDDSIIVDADMTSSAKEGPPLNRLLVKKLDSPVA 211
ARPVKRVIQQLVENEIAMGVLRGDFKE+DSIIVDAD+ S KE LNRLL+KKLDSPVA
Sbjct: 912 ARPVKRVIQQLVENEIAMGVLRGDFKEEDSIIVDADVAPSGKE-RSLNRLLIKKLDSPVA 970
Query: 210 DAMVAN 193
DAMV N
Sbjct: 971 DAMVVN 976
>ref|NP_565586.1| HSP100/ClpB, putative; protein id: At2g25140.1, supported by cDNA:
gi_17979453 [Arabidopsis thaliana]
gi|17979454|gb|AAL50064.1| At2g25140/F13D4.100
[Arabidopsis thaliana] gi|25090122|gb|AAN72234.1|
At2g25140/F13D4.100 [Arabidopsis thaliana]
Length = 964
Score = 162 bits (410), Expect = 3e-39
Identities = 81/117 (69%), Positives = 100/117 (85%)
Frame = -2
Query: 570 MNRIDEYIVFQPLDSKEISKIVELQMERVKNRLKQKKIDLHYTQEALELLSVLGFDPNFG 391
MNRIDEYIVFQPLDS EISKIVELQM RVKN L+QKKI L YT+EA++LL+ LGFDPN+G
Sbjct: 845 MNRIDEYIVFQPLDSNEISKIVELQMRRVKNSLEQKKIKLQYTKEAVDLLAQLGFDPNYG 904
Query: 390 ARPVKRVIQQLVENEIAMGVLRGDFKEDDSIIVDADMTSSAKEGPPLNRLLVKKLDS 220
ARPVKRVIQQ+VENEIA+G+L+GDF E+D+++VD D +S N+L++KKL+S
Sbjct: 905 ARPVKRVIQQMVENEIAVGILKGDFAEEDTVLVDVDHLASD------NKLVIKKLES 955
>pir||G84644 probable ATP-dependent CLPB protein [imported] - Arabidopsis thaliana
Length = 874
Score = 162 bits (410), Expect = 3e-39
Identities = 81/117 (69%), Positives = 100/117 (85%)
Frame = -2
Query: 570 MNRIDEYIVFQPLDSKEISKIVELQMERVKNRLKQKKIDLHYTQEALELLSVLGFDPNFG 391
MNRIDEYIVFQPLDS EISKIVELQM RVKN L+QKKI L YT+EA++LL+ LGFDPN+G
Sbjct: 755 MNRIDEYIVFQPLDSNEISKIVELQMRRVKNSLEQKKIKLQYTKEAVDLLAQLGFDPNYG 814
Query: 390 ARPVKRVIQQLVENEIAMGVLRGDFKEDDSIIVDADMTSSAKEGPPLNRLLVKKLDS 220
ARPVKRVIQQ+VENEIA+G+L+GDF E+D+++VD D +S N+L++KKL+S
Sbjct: 815 ARPVKRVIQQMVENEIAVGILKGDFAEEDTVLVDVDHLASD------NKLVIKKLES 865
>gb|AAN17424.1| HSP100/ClpB, putative [Arabidopsis thaliana]
gi|27311927|gb|AAO00929.1| HSP100/ClpB, putative
[Arabidopsis thaliana]
Length = 173
Score = 142 bits (358), Expect = 3e-33
Identities = 65/122 (53%), Positives = 95/122 (77%)
Frame = -2
Query: 570 MNRIDEYIVFQPLDSKEISKIVELQMERVKNRLKQKKIDLHYTQEALELLSVLGFDPNFG 391
MNR+DEYIVF+PLD ++I++IV LQ+ RV+ R+ +K+ ++ T A++LL LG+DPN+G
Sbjct: 43 MNRVDEYIVFKPLDREQINRIVRLQLARVQKRIADRKMKINITDAAVDLLGSLGYDPNYG 102
Query: 390 ARPVKRVIQQLVENEIAMGVLRGDFKEDDSIIVDADMTSSAKEGPPLNRLLVKKLDSPVA 211
ARPVKRVIQQ +ENE+A G+LRGDFKE+D I++D ++T+ + P +L KK++S A
Sbjct: 103 ARPVKRVIQQNIENELAKGILRGDFKEEDGILIDTEVTAFSNGQLPQQKLTFKKIESETA 162
Query: 210 DA 205
DA
Sbjct: 163 DA 164
>ref|NP_568314.1| HSP100/ClpB, putative; protein id: At5g15450.1 [Arabidopsis thaliana]
gi|11265210|pir||T51523 clpB heat shock protein-like -
Arabidopsis thaliana gi|9755800|emb|CAC01744.1| clpB heat
shock protein-like [Arabidopsis thaliana]
Length = 968
Score = 142 bits (358), Expect = 3e-33
Identities = 65/122 (53%), Positives = 95/122 (77%)
Frame = -2
Query: 570 MNRIDEYIVFQPLDSKEISKIVELQMERVKNRLKQKKIDLHYTQEALELLSVLGFDPNFG 391
MNR+DEYIVF+PLD ++I++IV LQ+ RV+ R+ +K+ ++ T A++LL LG+DPN+G
Sbjct: 838 MNRVDEYIVFKPLDREQINRIVRLQLARVQKRIADRKMKINITDAAVDLLGSLGYDPNYG 897
Query: 390 ARPVKRVIQQLVENEIAMGVLRGDFKEDDSIIVDADMTSSAKEGPPLNRLLVKKLDSPVA 211
ARPVKRVIQQ +ENE+A G+LRGDFKE+D I++D ++T+ + P +L KK++S A
Sbjct: 898 ARPVKRVIQQNIENELAKGILRGDFKEEDGILIDTEVTAFSNGQLPQQKLTFKKIESETA 957
Query: 210 DA 205
DA
Sbjct: 958 DA 959
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,940,802
Number of Sequences: 1393205
Number of extensions: 9410841
Number of successful extensions: 23689
Number of sequences better than 10.0: 422
Number of HSP's better than 10.0 without gapping: 22701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23663
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
