Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000221A_C02 KMC000221A_c02
(618 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14766|LTBL_HUMAN Latent transforming growth factor beta bind... 35 0.60
emb|CAB55572.1| cytochrome oxidase subunit II [Globodera pallida] 30 1.0
>sp|Q14766|LTBL_HUMAN Latent transforming growth factor beta binding protein 1L precursor
(LTBP-1) (Transforming growth factor beta-1 binding
protein 1) (TGF-beta1-BP-1)
Length = 1595
Score = 35.4 bits (80), Expect = 0.60
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +2
Query: 341 YVQHPLAKQYRIQEANPKLQQPPTQLQLEIKSHPEPKALINIHRGMPLD*LTIQTLMK*I 520
YVQ +A +++Q K++ PP + + +K HP P+A + IH+ +D T Q +
Sbjct: 335 YVQDQVAAPFQLQGV--KVKFPPNIVNIHVK-HP-PEASVQIHQVSRIDGPTGQKTKEAQ 390
Query: 521 PGFLQTTTSMISMESNQT---GYSHQYSHP 601
PG Q + + ++ QT YSHQ P
Sbjct: 391 PGQSQVSYQGLPVQKTQTIHSTYSHQQVIP 420
>emb|CAB55572.1| cytochrome oxidase subunit II [Globodera pallida]
Length = 237
Score = 30.4 bits (67), Expect(2) = 1.0
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -3
Query: 451 FWFRMAFD--FKLQLGWRLLQFWICFLDPVLF 362
F+F FD FKL+L + L+FW CF+ PV F
Sbjct: 43 FFFLGVFDYFFKLELSFGALEFWGCFI-PVFF 73
Score = 23.1 bits (48), Expect(2) = 1.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 254 LFV*FSGPLNVLCRSLSIKV 195
LF+ FS L LC LS+KV
Sbjct: 82 LFLLFSSSLLSLCNDLSVKV 101
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,826,289
Number of Sequences: 1393205
Number of extensions: 11977871
Number of successful extensions: 32330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32292
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
