Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000220A_C02 KMC000220A_c02
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181511.1| hypothetical protein; protein id: At2g39810.1 [... 51 9e-06
gb|AAO42259.1| unknown protein [Arabidopsis thaliana] gi|2897322... 51 9e-06
gb|AAG30259.1|AF307334_5 PHA synthase subunit PhaC [Ectothiorhod... 42 0.005
sp|P45366|PHBC_THIVI Poly-beta-hydroxybutyrate polymerase (Poly(... 40 0.020
pir||S29274 poly (3-hydroxybutyric acid) synthase - Chromatium v... 38 0.077
>ref|NP_181511.1| hypothetical protein; protein id: At2g39810.1 [Arabidopsis thaliana]
gi|7487692|pir||T01011 hypothetical protein At2g39810
[imported] - Arabidopsis thaliana
gi|2642163|gb|AAB87130.1| hypothetical protein
[Arabidopsis thaliana]
Length = 841
Score = 51.2 bits (121), Expect = 9e-06
Identities = 41/121 (33%), Positives = 54/121 (43%), Gaps = 20/121 (16%)
Frame = -3
Query: 555 FXHNEATSPMYSWKTTTNPVTSRNVQLHKDDRSWNIESA----------------NDSMD 424
+ N +SP T NPVT ++ H + S ES +D MD
Sbjct: 725 YIENNMSSPYLRRITANNPVTVKSSSNHLNGSSQKPESTFFGTRMQPDKDNFVDLDDPMD 784
Query: 423 VSQSHMEKK---LDTEEKIN-GGLRWRSDETSDGEEEQGAMDIGYDATPTRTTRRIRVAK 256
+S S + L TE + N GGLRWRSDETSD E+E + + P + RR R A
Sbjct: 785 MSSSLKDNNNNVLATESRNNSGGLRWRSDETSDDEDEL----TSFGSMPVKGRRRRRFAA 840
Query: 255 R 253
R
Sbjct: 841 R 841
>gb|AAO42259.1| unknown protein [Arabidopsis thaliana] gi|28973225|gb|AAO63937.1|
unknown protein [Arabidopsis thaliana]
Length = 927
Score = 51.2 bits (121), Expect = 9e-06
Identities = 41/121 (33%), Positives = 54/121 (43%), Gaps = 20/121 (16%)
Frame = -3
Query: 555 FXHNEATSPMYSWKTTTNPVTSRNVQLHKDDRSWNIESA----------------NDSMD 424
+ N +SP T NPVT ++ H + S ES +D MD
Sbjct: 811 YIENNMSSPYLRRITANNPVTVKSSSNHLNGSSQKPESTFFGTRMQPDKDNFVDLDDPMD 870
Query: 423 VSQSHMEKK---LDTEEKIN-GGLRWRSDETSDGEEEQGAMDIGYDATPTRTTRRIRVAK 256
+S S + L TE + N GGLRWRSDETSD E+E + + P + RR R A
Sbjct: 871 MSSSLKDNNNNVLATESRNNSGGLRWRSDETSDDEDEL----TSFGSMPVKGRRRRRFAA 926
Query: 255 R 253
R
Sbjct: 927 R 927
>gb|AAG30259.1|AF307334_5 PHA synthase subunit PhaC [Ectothiorhodospira shaposhnikovii]
Length = 355
Score = 42.0 bits (97), Expect = 0.005
Identities = 22/84 (26%), Positives = 42/84 (49%)
Frame = +2
Query: 311 SIAPCSSSPSLVSSDLHLSPPLIFSSVSNFFSIWLCETSIESLADSIFQLLSSLCNWTFL 490
S+ + P V + + + P+ F + N S W+ I++L D++ + L NWTFL
Sbjct: 154 SLCYSAMHPEKVQNLITMVTPVDFQTPDNILSHWVKHVDIDTLVDTMGNVPGELLNWTFL 213
Query: 491 LVTGLVVVFQEYIGLVASLWXKSR 562
+ ++ Q+Y+ +V L K +
Sbjct: 214 NLKPYQLMGQKYLDMVEVLQDKDK 237
>sp|P45366|PHBC_THIVI Poly-beta-hydroxybutyrate polymerase (Poly(3-hydroxybutyrate)
polymerase) (PHB polymerase) (PHB synthase)
(Poly(3-hydroxyalkanoate) polymerase) (PHA polymerase)
(PHA synthase) (Polyhydroxyalkanoic acid synthase)
gi|478096|pir||D48376 poly(3-hydroxyalkanoate) synthase
phbC - Thiocystis violacea gi|298253|gb|AAC60430.1|
poly(3-hydroxyalkanoate) synthase [Thiocystis violacea]
gi|311002|gb|AAB02862.1| PHA synthase
Length = 355
Score = 40.0 bits (92), Expect = 0.020
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +2
Query: 311 SIAPCSSSPSLVSSDLHLSPPLIFSSVSNFFSIWLCETSIESLADSIFQLLSSLCNWTFL 490
S+ S P V + + + P+ F + N S W+ I+ D++ + L NWTFL
Sbjct: 154 SLMYASLHPDKVKNLVTMVTPVDFKTPGNLLSAWVQNVDIDLAVDTMGNIPGELLNWTFL 213
Query: 491 LVTGLVVVFQEYIGLVASL 547
+ + Q+Y+ +V L
Sbjct: 214 SLKPFSLTGQKYVNMVDML 232
>pir||S29274 poly (3-hydroxybutyric acid) synthase - Chromatium vinosum
Length = 355
Score = 38.1 bits (87), Expect = 0.077
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 335 PSLVSSDLHLSPPLIFSSVSNFFSIWLCETSIESLADSIFQLLSSLCNWTFLLVTGLVVV 514
P V + + + P+ F + N S W+ I+ D++ + L NWTFL + +
Sbjct: 163 PDKVRNLVTMVTPVDFKTPDNLLSAWVQNVDIDLAVDTMGNIPGELLNWTFLSLKPFSLT 222
Query: 515 FQEYIGLV 538
Q+Y+ +V
Sbjct: 223 GQKYVNMV 230
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,967,116
Number of Sequences: 1393205
Number of extensions: 9478161
Number of successful extensions: 28238
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 27149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28213
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
