Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000217A_C01 KMC000217A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_717098.1| glutathione-regulated potassium-efflux system p... 32 5.2
ref|NP_078932.1| hypothetical protein FLJ22329 [Homo sapiens] gi... 31 8.9
dbj|BAC11307.1| unnamed protein product [Homo sapiens] 31 8.9
dbj|BAC11684.1| unnamed protein product [Homo sapiens] 31 8.9
gb|AAH20492.1|AAH20492 Similar to hypothetical protein FLJ22329 ... 31 8.9
>ref|NP_717098.1| glutathione-regulated potassium-efflux system protein [Shewanella
oneidensis MR-1] gi|24347231|gb|AAN54542.1|AE015593_1
glutathione-regulated potassium-efflux system protein
[Shewanella oneidensis MR-1]
Length = 589
Score = 32.0 bits (71), Expect = 5.2
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Frame = -1
Query: 493 HPCSIWRIGHFMSRHKVLIFMLGS--CIISGAAVLGMLWGFALLIYVNIENGIFCFALSV 320
+P +W + + IF LGS ++S AA+ G+ WGF L I + G +LS
Sbjct: 76 NPSKLWEL-------RSAIFGLGSGQLLLSWAAIGGLAWGFGLSIEAALVVGA-ALSLSS 127
Query: 319 SRF---LCLASFFL*TPGVQSSFGY*LFQ----IPDLFLVKALYPS 203
+ F L L TP + +FG L Q IP L L L P+
Sbjct: 128 TAFAVQLMSEHRLLTTPLGRDAFGVLLMQDLAVIPMLLLTAYLAPN 173
>ref|NP_078932.1| hypothetical protein FLJ22329 [Homo sapiens]
gi|10438672|dbj|BAB15308.1| unnamed protein product
[Homo sapiens]
Length = 243
Score = 31.2 bits (69), Expect = 8.9
Identities = 16/37 (43%), Positives = 23/37 (61%)
Frame = +3
Query: 162 EKLLVYIPTQYTSGEG*RALTRNKSGIWNSQYPKDDW 272
E LL+Y PT YT +G + T S +WN+++ K DW
Sbjct: 173 EPLLIY-PTHYTGDDGYVSDTET-SVVWNNEHVKTDW 207
>dbj|BAC11307.1| unnamed protein product [Homo sapiens]
Length = 622
Score = 31.2 bits (69), Expect = 8.9
Identities = 16/37 (43%), Positives = 23/37 (61%)
Frame = +3
Query: 162 EKLLVYIPTQYTSGEG*RALTRNKSGIWNSQYPKDDW 272
E LL+Y PT YT +G + T S +WN+++ K DW
Sbjct: 552 EPLLIY-PTHYTGDDGYVSDTET-SVVWNNEHVKTDW 586
>dbj|BAC11684.1| unnamed protein product [Homo sapiens]
Length = 622
Score = 31.2 bits (69), Expect = 8.9
Identities = 16/37 (43%), Positives = 23/37 (61%)
Frame = +3
Query: 162 EKLLVYIPTQYTSGEG*RALTRNKSGIWNSQYPKDDW 272
E LL+Y PT YT +G + T S +WN+++ K DW
Sbjct: 552 EPLLIY-PTHYTGDDGYVSDTET-SVVWNNEHVKTDW 586
>gb|AAH20492.1|AAH20492 Similar to hypothetical protein FLJ22329 [Homo sapiens]
Length = 231
Score = 31.2 bits (69), Expect = 8.9
Identities = 16/37 (43%), Positives = 23/37 (61%)
Frame = +3
Query: 162 EKLLVYIPTQYTSGEG*RALTRNKSGIWNSQYPKDDW 272
E LL+Y PT YT +G + T S +WN+++ K DW
Sbjct: 161 EPLLIY-PTHYTGDDGYVSDTET-SVVWNNEHVKTDW 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,310,304
Number of Sequences: 1393205
Number of extensions: 10492452
Number of successful extensions: 26204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26199
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
