Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000216A_C03 KMC000216A_c03
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC18556.1| early nodulin ENOD18 [Vicia faba] 150 4e-44
emb|CAC18558.1| ENOD18 protein [Vicia faba] 150 6e-44
emb|CAC18557.1| early nodulin ENOD18 [Vicia faba] 147 5e-43
pir||T45939 hypothetical protein F5K20.290 - Arabidopsis thalian... 149 9e-42
ref|NP_683523.1| expressed protein; protein id: At3g03270.2 [Ara... 114 5e-31
>emb|CAC18556.1| early nodulin ENOD18 [Vicia faba]
Length = 165
Score = 150 bits (380), Expect(2) = 4e-44
Identities = 75/111 (67%), Positives = 92/111 (82%), Gaps = 3/111 (2%)
Frame = -3
Query: 551 SALKWAIENMADKGDTFYIIHV---MSDGSRTNIWAKSGSPLIPLSILRQPEAMSNYGVQ 381
+ALKWAI NMADKGDTFY+IH+ SD SR+ ++AK+GSPLIPL L++ M YGVQ
Sbjct: 19 NALKWAIVNMADKGDTFYLIHINSNSSDESRSKLFAKTGSPLIPLEELKEAGVMKQYGVQ 78
Query: 380 TDPEVLDMLDAAAGPKEVNFVAKLYWGEARQKLIDSIEDLKLDSLVMGSRG 228
TD EV+D+L+ AA KEV+ VAKLYWG+ARQKL+DSIEDLKLD+LV+GSRG
Sbjct: 79 TDVEVIDLLEIAATQKEVSVVAKLYWGDARQKLMDSIEDLKLDALVLGSRG 129
Score = 48.9 bits (115), Expect(2) = 4e-44
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = -1
Query: 235 AEGRGSIQRILMGSVSNFLMIHATCPVAIVRDSSKS 128
+ G +I+RIL+GSVSNF+M+H+ CPV IV+D S S
Sbjct: 127 SRGLSTIKRILLGSVSNFVMVHSPCPVTIVKDYSSS 162
>emb|CAC18558.1| ENOD18 protein [Vicia faba]
Length = 164
Score = 150 bits (379), Expect(2) = 6e-44
Identities = 75/111 (67%), Positives = 91/111 (81%), Gaps = 3/111 (2%)
Frame = -3
Query: 551 SALKWAIENMADKGDTFYIIHV---MSDGSRTNIWAKSGSPLIPLSILRQPEAMSNYGVQ 381
+ALKWAI NMADKGDTFY+IH+ SD SR ++AK+GSPLIPL L++ M YGVQ
Sbjct: 18 NALKWAIVNMADKGDTFYLIHINSNSSDESRNKLFAKTGSPLIPLEELKEAGVMKQYGVQ 77
Query: 380 TDPEVLDMLDAAAGPKEVNFVAKLYWGEARQKLIDSIEDLKLDSLVMGSRG 228
TD EV+D+L+ AA KEV+ VAKLYWG+ARQKL+DSIEDLKLD+LV+GSRG
Sbjct: 78 TDVEVIDLLEIAATQKEVSVVAKLYWGDARQKLMDSIEDLKLDALVLGSRG 128
Score = 48.9 bits (115), Expect(2) = 6e-44
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = -1
Query: 235 AEGRGSIQRILMGSVSNFLMIHATCPVAIVRDSSKS 128
+ G +I+RIL+GSVSNF+M+H+ CPV IV+D S S
Sbjct: 126 SRGLSTIKRILLGSVSNFVMVHSPCPVTIVKDYSSS 161
>emb|CAC18557.1| early nodulin ENOD18 [Vicia faba]
Length = 164
Score = 147 bits (371), Expect(2) = 5e-43
Identities = 75/111 (67%), Positives = 92/111 (82%), Gaps = 3/111 (2%)
Frame = -3
Query: 551 SALKWAIENMADKGDTFYIIHV---MSDGSRTNIWAKSGSPLIPLSILRQPEAMSNYGVQ 381
+ALKWAI NMADKGDTFY+IH+ SD SR+ ++AK+GSPLIPL L++ M YGVQ
Sbjct: 19 NALKWAIVNMADKGDTFYLIHINSNSSDESRSKLFAKTGSPLIPLE-LKEAGVMKQYGVQ 77
Query: 380 TDPEVLDMLDAAAGPKEVNFVAKLYWGEARQKLIDSIEDLKLDSLVMGSRG 228
TD EV+D+L+ AA KEV+ VAKLYWG+ARQKL+DSIEDLKLD+LV+GSRG
Sbjct: 78 TDVEVIDLLEIAATQKEVSVVAKLYWGDARQKLMDSIEDLKLDALVLGSRG 128
Score = 48.9 bits (115), Expect(2) = 5e-43
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = -1
Query: 235 AEGRGSIQRILMGSVSNFLMIHATCPVAIVRDSSKS 128
+ G +I+RIL+GSVSNF+M+H+ CPV IV+D S S
Sbjct: 126 SRGLSTIKRILLGSVSNFVMVHSPCPVTIVKDYSSS 161
>pir||T45939 hypothetical protein F5K20.290 - Arabidopsis thaliana
gi|7630019|emb|CAB88361.1| hypothetical protein
[Arabidopsis thaliana]
gi|11692860|gb|AAG40033.1|AF324682_1 AT3g53990
[Arabidopsis thaliana]
gi|11762224|gb|AAG40390.1|AF325038_1 AT3g53990
[Arabidopsis thaliana]
gi|11908110|gb|AAG41484.1|AF326902_1 unknown protein
[Arabidopsis thaliana]
gi|12642922|gb|AAK00403.1|AF339721_1 unknown protein
[Arabidopsis thaliana]
gi|13605748|gb|AAK32867.1|AF361855_1 AT3g53990/F5K20_290
[Arabidopsis thaliana] gi|15450449|gb|AAK96518.1|
AT3g53990/F5K20_290 [Arabidopsis thaliana]
gi|16974447|gb|AAL31227.1| AT3g53990/F5K20_290
[Arabidopsis thaliana] gi|17979251|gb|AAL49942.1|
AT3g53990/F5K20_290 [Arabidopsis thaliana]
Length = 160
Score = 149 bits (375), Expect(2) = 9e-42
Identities = 71/111 (63%), Positives = 88/111 (78%), Gaps = 3/111 (2%)
Frame = -3
Query: 551 SALKWAIENMADKGDTFYIIHVM---SDGSRTNIWAKSGSPLIPLSILRQPEAMSNYGVQ 381
+ALKWAIEN+ADKGDT YIIH + D SR ++W KSGSPLIPL+ R+PE M YGV+
Sbjct: 19 NALKWAIENLADKGDTIYIIHTLPLSGDESRNSLWFKSGSPLIPLAEFREPEIMEKYGVK 78
Query: 380 TDPEVLDMLDAAAGPKEVNFVAKLYWGEARQKLIDSIEDLKLDSLVMGSRG 228
TD LDMLD + KEV+ V KLYWG+AR+KL+D+++DLKLDS+VMGSRG
Sbjct: 79 TDIACLDMLDTGSRQKEVHVVTKLYWGDAREKLVDAVKDLKLDSIVMGSRG 129
Score = 43.1 bits (100), Expect(2) = 9e-42
Identities = 17/33 (51%), Positives = 27/33 (81%)
Frame = -1
Query: 235 AEGRGSIQRILMGSVSNFLMIHATCPVAIVRDS 137
+ G ++QRI+MGSVS+F++ HA CPV +V+D+
Sbjct: 127 SRGLSALQRIIMGSVSSFVIQHAPCPVTVVKDN 159
>ref|NP_683523.1| expressed protein; protein id: At3g03270.2 [Arabidopsis thaliana]
gi|6714413|gb|AAF26101.1|AC012328_4 unknown protein
[Arabidopsis thaliana]
Length = 159
Score = 114 bits (285), Expect(2) = 5e-31
Identities = 55/110 (50%), Positives = 78/110 (70%), Gaps = 3/110 (2%)
Frame = -3
Query: 548 ALKWAIENMADKGDTFYIIHVM---SDGSRTNIWAKSGSPLIPLSILRQPEAMSNYGVQT 378
AL+WA EN+ + GDT +IHV +D +R ++ ++GSPLIPL R+ YG+
Sbjct: 20 ALRWAAENLLEDGDTVILIHVQPQNADHTRKILFEETGSPLIPLEEFREVNLSKQYGLAY 79
Query: 377 DPEVLDMLDAAAGPKEVNFVAKLYWGEARQKLIDSIEDLKLDSLVMGSRG 228
DPEVLD+LD + K+V VAK+YWG+ R+KL D++E+LKLDS+V+GSRG
Sbjct: 80 DPEVLDVLDTLSRAKKVKVVAKVYWGDPREKLCDAVENLKLDSIVLGSRG 129
Score = 41.6 bits (96), Expect(2) = 5e-31
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = -1
Query: 235 AEGRGSIQRILMGSVSNFLMIHATCPVAIVR 143
+ G GS++RIL+GSVSN ++ +ATCPV +V+
Sbjct: 127 SRGLGSLKRILLGSVSNHVVTNATCPVTVVK 157
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,494,656
Number of Sequences: 1393205
Number of extensions: 9928729
Number of successful extensions: 24139
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 23401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24116
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
