Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000214A_C01 KMC000214A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02266.1| transcription factor X1-like protein [Arabidopsi... 169 2e-41
ref|NP_187861.1| unknown protein; protein id: At3g12550.1 [Arabi... 169 2e-41
ref|NP_192087.1| hypothetical protein; protein id: At4g01780.1 [... 168 4e-41
pir||T01997 hypothetical protein T15B16.7 - Arabidopsis thaliana... 168 4e-41
pir||T46211 hypothetical protein T8P19.180 - Arabidopsis thalian... 168 5e-41
>dbj|BAB02266.1| transcription factor X1-like protein [Arabidopsis thaliana]
Length = 638
Score = 169 bits (428), Expect = 2e-41
Identities = 80/129 (62%), Positives = 100/129 (77%), Gaps = 2/129 (1%)
Frame = -3
Query: 575 MGELDTRPFVEAMKMKYNEADAEDRASELCSLWEEYLKDPDWHPFKISMIEGKHQ--EII 402
MGELDT+PF++AM++KY + D ED A E+ LWEEYLKDPDWHPFK +E E+I
Sbjct: 506 MGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETIVEVI 565
Query: 401 DDEDEKLRGLKNEMGEGVYEAVVTALREINEYNPSGRYITSELWNYKEGRRATSKEGVQV 222
D++DEKLR LKNE+G+ Y+AV AL EINEYNPSGRYI+SELWN++E R+AT +EGV
Sbjct: 566 DEDDEKLRTLKNELGDDAYQAVANALLEINEYNPSGRYISSELWNFREDRKATLEEGVNS 625
Query: 221 LLKQWKLYK 195
LL+QW K
Sbjct: 626 LLEQWNQAK 634
>ref|NP_187861.1| unknown protein; protein id: At3g12550.1 [Arabidopsis thaliana]
gi|12321947|gb|AAG51004.1|AC069474_3 unknown protein;
49125-46422 [Arabidopsis thaliana]
Length = 635
Score = 169 bits (428), Expect = 2e-41
Identities = 80/129 (62%), Positives = 100/129 (77%), Gaps = 2/129 (1%)
Frame = -3
Query: 575 MGELDTRPFVEAMKMKYNEADAEDRASELCSLWEEYLKDPDWHPFKISMIEGKHQ--EII 402
MGELDT+PF++AM++KY + D ED A E+ LWEEYLKDPDWHPFK +E E+I
Sbjct: 503 MGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETIVEVI 562
Query: 401 DDEDEKLRGLKNEMGEGVYEAVVTALREINEYNPSGRYITSELWNYKEGRRATSKEGVQV 222
D++DEKLR LKNE+G+ Y+AV AL EINEYNPSGRYI+SELWN++E R+AT +EGV
Sbjct: 563 DEDDEKLRTLKNELGDDAYQAVANALLEINEYNPSGRYISSELWNFREDRKATLEEGVNS 622
Query: 221 LLKQWKLYK 195
LL+QW K
Sbjct: 623 LLEQWNQAK 631
>ref|NP_192087.1| hypothetical protein; protein id: At4g01780.1 [Arabidopsis
thaliana] gi|25407127|pir||H85022 hypothetical protein
AT4g01780 [imported] - Arabidopsis thaliana
gi|4558547|gb|AAD22640.1|AC007138_4 hypothetical protein
[Arabidopsis thaliana] gi|7268221|emb|CAB77748.1|
hypothetical protein [Arabidopsis thaliana]
Length = 456
Score = 168 bits (426), Expect = 4e-41
Identities = 80/134 (59%), Positives = 100/134 (73%), Gaps = 2/134 (1%)
Frame = -3
Query: 575 MGELDTRPFVEAMKMKYNEADAEDRASELCSLWEEYLKDPDWHPFKISMIEGKHQEI--I 402
MGEL +PFV+AM+ KY + D EDRA E+ LWE Y+ DPDWHP+K +E + +E+ I
Sbjct: 322 MGELVRKPFVDAMQQKYCQEDVEDRAVEVLQLWEHYINDPDWHPYKRVKLENQDREVEVI 381
Query: 401 DDEDEKLRGLKNEMGEGVYEAVVTALREINEYNPSGRYITSELWNYKEGRRATSKEGVQV 222
DD DEKLR LK ++G+G Y AV AL EINEYNPSGRYIT+ELWN+KE +RAT +EGV
Sbjct: 382 DDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKEDKRATLEEGVTC 441
Query: 221 LLKQWKLYKQKTGM 180
LL QW+ K+K GM
Sbjct: 442 LLDQWEKAKRKRGM 455
>pir||T01997 hypothetical protein T15B16.7 - Arabidopsis thaliana
gi|3859594|gb|AAC72860.1| contains similarity to
ribosomal protein L7Ae (Pfam: PF01248, E=0.0017, N=1)
[Arabidopsis thaliana]
Length = 603
Score = 168 bits (426), Expect = 4e-41
Identities = 80/134 (59%), Positives = 100/134 (73%), Gaps = 2/134 (1%)
Frame = -3
Query: 575 MGELDTRPFVEAMKMKYNEADAEDRASELCSLWEEYLKDPDWHPFKISMIEGKHQEI--I 402
MGEL +PFV+AM+ KY + D EDRA E+ LWE Y+ DPDWHP+K +E + +E+ I
Sbjct: 314 MGELVRKPFVDAMQQKYCQEDVEDRAVEVLQLWEHYINDPDWHPYKRVKLENQDREVEVI 373
Query: 401 DDEDEKLRGLKNEMGEGVYEAVVTALREINEYNPSGRYITSELWNYKEGRRATSKEGVQV 222
DD DEKLR LK ++G+G Y AV AL EINEYNPSGRYIT+ELWN+KE +RAT +EGV
Sbjct: 374 DDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKEDKRATLEEGVTC 433
Query: 221 LLKQWKLYKQKTGM 180
LL QW+ K+K GM
Sbjct: 434 LLDQWEKAKRKRGM 447
>pir||T46211 hypothetical protein T8P19.180 - Arabidopsis thaliana
gi|6523098|emb|CAB62356.1| putative protein [Arabidopsis
thaliana]
Length = 644
Score = 168 bits (425), Expect = 5e-41
Identities = 81/134 (60%), Positives = 100/134 (74%), Gaps = 2/134 (1%)
Frame = -3
Query: 575 MGELDTRPFVEAMKMKYNEADAEDRASELCSLWEEYLKDPDWHPFKISMIEGKHQEI--I 402
MGEL T+PFV+AM+ KY + D EDRA E+ LWE YLKD DWHPFK +E + +E+ I
Sbjct: 510 MGELVTKPFVDAMQQKYCQQDVEDRAVEVLQLWEHYLKDSDWHPFKRVKLENEDREVEVI 569
Query: 401 DDEDEKLRGLKNEMGEGVYEAVVTALREINEYNPSGRYITSELWNYKEGRRATSKEGVQV 222
DD DEKLR LK ++G+G Y AV AL EINEYNPSGRYIT+ELWN+K ++AT +EGV
Sbjct: 570 DDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKADKKATLEEGVTC 629
Query: 221 LLKQWKLYKQKTGM 180
LL QW+ K+K GM
Sbjct: 630 LLDQWEKAKRKRGM 643
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,547,908
Number of Sequences: 1393205
Number of extensions: 9564306
Number of successful extensions: 26414
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 25380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26344
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
