Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000210A_C02 KMC000210A_c02
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181430.1| unknown protein; protein id: At2g38960.1 [Arabi... 86 2e-16
ref|NP_177372.1| disulfide bond formation protein, putative; pro... 74 9e-13
gb|AAL96670.1|AF489856_1 endoplasmic oxidoreductase 1 beta [Mus ... 33 3.1
ref|NP_663513.1| similar to CG10723 gene product [Mus musculus] ... 32 4.1
ref|XP_144323.1| similar to DKFZP564P1916 protein; hypothetical ... 31 9.1
>ref|NP_181430.1| unknown protein; protein id: At2g38960.1 [Arabidopsis thaliana]
gi|25353048|pir||E84811 hypothetical protein At2g38960
[imported] - Arabidopsis thaliana
gi|3928083|gb|AAC79609.1| unknown protein [Arabidopsis
thaliana]
Length = 519
Score = 86.3 bits (212), Expect = 2e-16
Identities = 44/74 (59%), Positives = 53/74 (71%)
Frame = -1
Query: 562 LKILFTVDGQENLDQTLQLXRNEVIALMNLLXRLSESVKFVHEMGPTAERVMEGHLSVHS 383
LKILFTV+G++NL L+L RNEVIALMNLL RLSESVK+VH+M P AER+ GH S
Sbjct: 392 LKILFTVNGEDNLRHNLELQRNEVIALMNLLHRLSESVKYVHDMSPAAERIAGGHAS--- 448
Query: 382 KLIYSWNKFWSHVL 341
S N FW ++
Sbjct: 449 ----SGNSFWQRIV 458
>ref|NP_177372.1| disulfide bond formation protein, putative; protein id: At1g72280.1
[Arabidopsis thaliana] gi|25353049|pir||E96746
hypothetical protein T9N14.18 [imported] - Arabidopsis
thaliana gi|12323665|gb|AAG51798.1|AC067754_14 disulfide
bond formation protein, putative; 78451-75984
[Arabidopsis thaliana]
Length = 469
Score = 74.3 bits (181), Expect = 9e-13
Identities = 40/70 (57%), Positives = 48/70 (68%)
Frame = -1
Query: 562 LKILFTVDGQENLDQTLQLXRNEVIALMNLLXRLSESVKFVHEMGPTAERVMEGHLSVHS 383
LKILF+V Q+ DQTLQL RNEVIAL+NLL RLSESVK VH+M P ER+ME ++ S
Sbjct: 393 LKILFSVGNQDIGDQTLQLQRNEVIALVNLLNRLSESVKMVHDMSPDVERLMEDQIAKVS 452
Query: 382 KLIYSWNKFW 353
+ W
Sbjct: 453 AKPARLRRIW 462
>gb|AAL96670.1|AF489856_1 endoplasmic oxidoreductase 1 beta [Mus musculus]
gi|26334815|dbj|BAC31108.1| unnamed protein product [Mus
musculus]
Length = 467
Score = 32.7 bits (73), Expect = 3.1
Identities = 18/44 (40%), Positives = 26/44 (58%), Gaps = 5/44 (11%)
Frame = -1
Query: 562 LKILFTVDGQENLDQT-----LQLXRNEVIALMNLLXRLSESVK 446
LKILF+ +NL + QL R E++AL+N RLS S++
Sbjct: 411 LKILFSEKEIQNLPENSPSKGFQLTRQEIVALLNAFGRLSTSIR 454
>ref|NP_663513.1| similar to CG10723 gene product [Mus musculus]
gi|12805581|gb|AAH02270.1| Similar to
ubiquitin-conjugating enzyme E2 variant 1 [Mus musculus]
gi|26353148|dbj|BAC40204.1| unnamed protein product [Mus
musculus]
Length = 271
Score = 32.3 bits (72), Expect = 4.1
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Frame = +2
Query: 62 LHSVFPLV*LSFIFNVET-----------CYIHYCYILGKFSNQ----DHSFLSLIVWSN 196
L ++ PL+ +++ F ++ C++ I G F+NQ H++L L W
Sbjct: 142 LVTLLPLLNMAYKFRTQSPETLEQLYPWECFVFCLTIFGTFTNQIHKWSHTYLGLPYWVT 201
Query: 197 VSQKSQKPNYHLSLPACRYQMQHSVSH 277
V Q ++H+ LP +++ H H
Sbjct: 202 VLQ-----DWHVILPRKHHRIHHVAPH 223
>ref|XP_144323.1| similar to DKFZP564P1916 protein; hypothetical protein FLJ13022 [Mus
musculus]
Length = 1715
Score = 31.2 bits (69), Expect = 9.1
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 191 SNVSQKSQKPNYHLSLPACRYQMQHSVSHTKQ*PEGRATNTQKRECDLSFKYMRP 355
SN+S S ++ ++ R H + + G TQ CD F+Y+RP
Sbjct: 916 SNISLNSDVSDFSVNSSCLRNTKAHEIGSGESLSAGSRLTTQSGVCDSDFEYIRP 970
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,554,496
Number of Sequences: 1393205
Number of extensions: 9127388
Number of successful extensions: 20233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20232
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
