>KMC000209A_C01 KMC000209A_c01
gagagacaattAAAACCAAATCTTTCTTATAATATTAAAATCAGCTGCCTTCAAAGGCTG
TTGTATAGCTTTCTTGGCTACACCCATACATACAGACTAGCCCCAAACACAATGATAATA
GATCATGTCATAAAAATTAGGTCCTTAGAAATGATGAATAAAATCATAGAAACTATACAC
ATCTTTTCTTCTTAAGAAAATAACTCTGGATTCAAACTTAGTTTCCAAGCCCAAGGAGCC
TAAGAGCAATATGGAAATCTAAGCTGAAATTCTCTTCTTACACAATCAAAAGTCAATGTG
CCAAACTTAAACTTCTTAGTTACAAGATATTTGAGGATCACGAAATAACCTGGGTCACAT
ATACAGTGCTGTGAATTTGTGATTGAAGTTGTGTTTAGTAGGTGTGAGACAACCTACATA
AGCGTCGGCACAAAGAGCTCTCCAAAGCTTCAACGTAGATGACACTTTACATGCTCTTAT
AACCAACATTAAAATGGAGCAACATCAACTCAACATTTCCTTCATGCATTCTCACCCAAT
GGGTTGATGCTGAGCTGTTAGAAGTAGCAGACTAGCATCCTTCCGACAACAACAATCGGC
AAAGCATGTCCTGCAAAATCAGCAAGTATGAACTAATAATTGCACAATCCATTTGCATTG
TGTTACCATAACACAGCAAAATATTCAATATAAATCAATTAATCCAAATCTTGAATTACA
CTGAAACAATTAAGT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000209A_C01 KMC000209A_c01
         (735 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_578577.1| hypothetical protein [Pyrococcus furiosus DSM 3...    32  9.3

>ref|NP_578577.1| hypothetical protein [Pyrococcus furiosus DSM 3638]
           gi|18892879|gb|AAL80972.1| hypothetical protein
           [Pyrococcus furiosus DSM 3638]
          Length = 256

 Score = 32.0 bits (71), Expect = 9.3
 Identities = 14/42 (33%), Positives = 21/42 (49%)
 Frame = -2

Query: 410 VSHLLNTTSITNSQHCICDPGYFVILKYLVTKKFKFGTLTFD 285
           V  ++ T  +    HC+ D  Y +I +   TKK   GT+ FD
Sbjct: 97  VFDIIVTLRLKEPGHCVMDKAYVIIWRNNATKKAPLGTIEFD 138

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,753,792
Number of Sequences: 1393205
Number of extensions: 11152037
Number of successful extensions: 21962
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21959
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 GNLf011e05 BP075466 1 512 2 GENLf027g04 BP063790 12 473 3 SPDL070g02_f BP056355 12 403 4 GENLf035h12 BP064209 12 515 5 SPD041b10_f BP047239 13 496 6 GNLf011c04 BP075447 18 511 7 MRL043c08_f BP085809 29 402 8 MR006f10_f BP076418 101 552 9 GENLf091f01 BP067326 130 642 10 GENLf068c09 BP066002 190 640 11 GENLf008b03 BP062746 190 738

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