Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000208A_C03 KMC000208A_c03
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86183 protein T7A14.13 [imported] - Arabidopsis thaliana g... 33 2.9
gb|AAA98774.1| ND3 [Meloidogyne hapla] 31 8.4
>pir||H86183 protein T7A14.13 [imported] - Arabidopsis thaliana
gi|4056426|gb|AAC98000.1|AAC98000 T7A14.13 [Arabidopsis
thaliana]
Length = 284
Score = 32.7 bits (73), Expect = 2.9
Identities = 22/58 (37%), Positives = 31/58 (52%), Gaps = 1/58 (1%)
Frame = -2
Query: 527 KLVRQFLHILNRPCILLLXVXKSLPQFVCPINPAPR*NIFSAIADLVSIFR-YRHIFW 357
K LH+LN +LL+ + SLP FVCP N + + S I +SI R R +F+
Sbjct: 230 KKAMMLLHVLN---LLLILITLSLPFFVCPPNLSIPLVVLSVILTHISITRLLRFVFF 284
>gb|AAA98774.1| ND3 [Meloidogyne hapla]
Length = 101
Score = 31.2 bits (69), Expect = 8.4
Identities = 19/55 (34%), Positives = 31/55 (55%), Gaps = 5/55 (9%)
Frame = -1
Query: 219 IF*VVVIFFS-----SRHRYLIIFLGWLASGRFLHSLGSN*FGISKHFLCVYMIF 70
+F +++IFF ++ +Y + + SG +SLG N F I+ HF C+ MIF
Sbjct: 1 MFLLIMIFFFLTFMFTKKKYKKMKNSFFESG--FNSLGKNMFSINMHFFCLVMIF 53
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,564,582
Number of Sequences: 1393205
Number of extensions: 9878298
Number of successful extensions: 17048
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17048
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
