Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000206A_C01 KMC000206A_c01
(957 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_809894.1| two-component system sensor histidine kinase/re... 28 2.4
ref|NP_718735.1| lipopolysaccharide biosynthesis polymerase, put... 34 2.9
ref|NP_573369.1| CG7992-PA [Drosophila melanogaster] gi|7293567|... 33 8.4
>ref|NP_809894.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one component system') [Bacteroides
thetaiotaomicron VPI-5482] gi|29338286|gb|AAO76088.1|
two-component system sensor histidine kinase/response
regulator, hybrid ('one component system') [Bacteroides
thetaiotaomicron VPI-5482]
Length = 1472
Score = 27.7 bits (60), Expect(2) = 2.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 368 WKLSWWKSLPFVPFGVVLMY 309
W LSWW +L +V G+ +Y
Sbjct: 900 WWLSWWATLIYVILGIAALY 919
Score = 25.4 bits (54), Expect(2) = 2.4
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -3
Query: 520 FGDSVQIDLWSFCFSLPFIASNCVYNPYFNLLYVLYIYVLSAFEIYFHFSVGN 362
+ D++Q+ F++ F A N ++N V Y Y+L +E +H++ N
Sbjct: 812 YTDALQLKYNQSMFTIEFAALN-----FYNQNRVSYRYILEGYEKEWHYNGKN 859
>ref|NP_718735.1| lipopolysaccharide biosynthesis polymerase, putative [Shewanella
oneidensis MR-1] gi|24349341|gb|AAN56179.1|AE015755_8
lipopolysaccharide biosynthesis polymerase, putative
[Shewanella oneidensis MR-1]
Length = 417
Score = 34.3 bits (77), Expect = 2.9
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = -3
Query: 556 GISF*CLAQYAGFGDSVQIDLWSFCFSLPFIASNCVYNPYFNLLYVLYIYVLSAFEIYFH 377
G++F +YA F ++ W+ SLP + +P+F++LY+LYI+ L F ++
Sbjct: 304 GVAF---TEYANFNWIFEVGDWNINVSLP---AWFFISPWFSILYLLYIFSLCFFSVFLV 357
Query: 376 FSVG 365
+G
Sbjct: 358 KLIG 361
>ref|NP_573369.1| CG7992-PA [Drosophila melanogaster] gi|7293567|gb|AAF48940.1|
CG7992-PA [Drosophila melanogaster]
gi|21430480|gb|AAM50918.1| LP07257p [Drosophila
melanogaster]
Length = 480
Score = 32.7 bits (73), Expect = 8.4
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Frame = -1
Query: 603 HFLLLMLPTEY*YCYLELAFDVWLSTLDSVIQSKLISGLSAFPCLLLLVIACIIRILICF 424
+ +LL+L TE L + F W + L+ I+ SG+ + ++ A + LIC
Sbjct: 258 NIMLLLLFTEAVQFALFVYFVYWFA-LNPAIRLTEFSGIDG---MFWVIFAGSLLALICQ 313
Query: 423 MFC----TFMCSQLLKFTFTFLLEIILVEVSSICSIWGSFDVLMLVGLS 289
F TF+ SQ+ +FT LL +IL V+ S W + +L+L GLS
Sbjct: 314 WFLSVKVTFVGSQVALISFT-LLAMILCSVTD--SRWSLWLLLVLFGLS 359
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 815,582,686
Number of Sequences: 1393205
Number of extensions: 17876008
Number of successful extensions: 37425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37369
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 54078381240
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
